Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
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oena Merge pull request #49 from cmap/requests_update
updated requests to version without security issue
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README.rst

install with bioconda

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cmapPy: Tools for interacting with .gctx and .gct files, and other Connectivity Map resources

Connectivity Map, Broad Institute of MIT and Harvard

Documentation: https://clue.io/cmapPy/index.html

For questions/problems, please add an issue (that includes code/files that reproduce your problem) to the repository.

Contributing

We welcome contributors! For your pull requests, please include the following:

  • Sample code/file that reproducibly causes the bug/issue
  • Documented code providing fix
  • Unit tests evaluating added/modified methods.

Citation

If you use cmapPy and/or GCTx for your research, please cite Enache et al.