Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Clone or download
oena Merge pull request #49 from cmap/requests_update
updated requests to version without security issue
Latest commit 58acada Nov 9, 2018


install with bioconda Documentation Status

cmapPy: Tools for interacting with .gctx and .gct files, and other Connectivity Map resources

Connectivity Map, Broad Institute of MIT and Harvard


For questions/problems, please add an issue (that includes code/files that reproduce your problem) to the repository.


We welcome contributors! For your pull requests, please include the following:

  • Sample code/file that reproducibly causes the bug/issue
  • Documented code providing fix
  • Unit tests evaluating added/modified methods.


If you use cmapPy and/or GCTx for your research, please cite Enache et al.