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@coregenomics

Leighton Core Lab

  • Storrs, Connecticut

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  1. groHMM groHMM Public

    Fork of bioconductor groHMM: GRO-seq Analysis Pipeline

    C 1

  2. kmap kmap Public

    Generate mappable regions of the genome for a given K-mer length.

    R

  3. singularity-kmap singularity-kmap Public archive

    Singularity container for the kmap R package

    Shell

  4. promap promap Public archive

    PRO-seq mapping shell script

    Shell

  5. suppl-pmid-28904013 suppl-pmid-28904013 Public archive

    Reproduce PMID 28904013 supplementary code output

    Shell

Repositories

Showing 10 of 20 repositories
  • tsshmm Public

    Bioconductor package for de-novo transcription start site discovery from nuclear run-on sequencing data

    coregenomics/tsshmm’s past year of commit activity
    C 1 GPL-3.0 0 0 0 Updated Jul 27, 2024
  • snowfall Public Forked from cran/snowfall

    ❗ This is a read-only mirror of the CRAN R package repository. snowfall — Easier Cluster Computing (Based on 'snow')

    coregenomics/snowfall’s past year of commit activity
    R 0 1 0 0 Updated Apr 26, 2023
  • Rgtsvm Public Forked from Danko-Lab/Rgtsvm

    The R package for SVM with GPU architecture based on the GTSVM software

    coregenomics/Rgtsvm’s past year of commit activity
    C++ 0 12 0 0 Updated Apr 25, 2023
  • RPHAST Public Forked from CshlSiepelLab/RPHAST

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    coregenomics/RPHAST’s past year of commit activity
    C 0 3 0 0 Updated Apr 25, 2023
  • kmap Public

    Generate mappable regions of the genome for a given K-mer length.

    coregenomics/kmap’s past year of commit activity
    R 0 0 4 0 Updated Mar 21, 2022
  • groHMM Public

    Fork of bioconductor groHMM: GRO-seq Analysis Pipeline

    coregenomics/groHMM’s past year of commit activity
    C 1 0 2 0 Updated Mar 21, 2022
  • dREG Public Forked from Danko-Lab/dREG

    Detecting Regulatory Elements using GRO-seq and PRO-seq

    coregenomics/dREG’s past year of commit activity
    R 0 21 0 0 Updated Aug 15, 2018
  • nascentrna Public archive

    Classify nascent RNA transcripts using decision tree

    coregenomics/nascentrna’s past year of commit activity
    R 1 0 0 0 Updated May 25, 2018
  • corelab1 Public archive

    Ansible playbooks for corelab1 server

    coregenomics/corelab1’s past year of commit activity
    0 0 0 0 Updated Apr 16, 2018
  • suppl-pmid-28904013 Public archive

    Reproduce PMID 28904013 supplementary code output

    coregenomics/suppl-pmid-28904013’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 16, 2018
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