omicwas

Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments

Installation in R

In order to install the most recent version:

install.packages("devtools")
devtools::install_github("fumi-github/omicwas", build_vignettes = TRUE)

If you encounter dependency error for sva package, install it from Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sva")

To install from CRAN archive (possibly a version older than github):

install.packages("omicwas")

To uninstall package:

remove.packages("omicwas")

library(omicwas)
vignette("intro", package = "omicwas")

Preprint available from bioRxiv

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
R		R
build		build
data		data
inst/doc		inst/doc
man		man
tests		tests
vignettes		vignettes
DESCRIPTION		DESCRIPTION
MD5		MD5
NAMESPACE		NAMESPACE
README.md		README.md