Code for tracking things in hummingbird videos. Slides summarizing this work here.
- python3
- python packages (easiest installed with pip install <package_name> --user)
- matplotlib
- numpy
- scikit-learn
- imageio
- opencv-contrib-python
- argparse
- tqdm
- alternatively, one can install via pip (
pip3 install -r requirements.txt
)
- code / documentation for functions is located within subfolders
- "wing_tracking" folder finds angle over time from top view videos
- "meniscus_tracking" folder find meniscus over time from side view videos
- to run any code, first open terminal and cd do the directory containing the file
- in general, files/folders with spaces are not encouraged