hummingbird_tracking

Code for tracking things in hummingbird videos. Slides summarizing this work here.

requirements

• python3
• python packages (easiest installed with pip install <package_name> --user)
  • matplotlib
  • numpy
  • scikit-learn
  • imageio
  • opencv-contrib-python
  • argparse
  • tqdm
• alternatively, one can install via pip (pip3 install -r requirements.txt)

usage

• code / documentation for functions is located within subfolders
• "wing_tracking" folder finds angle over time from top view videos
  • 
• "meniscus_tracking" folder find meniscus over time from side view videos
  • 
• to run any code, first open terminal and cd do the directory containing the file
• in general, files/folders with spaces are not encouraged