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REMAG v0.2.0

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@danielzmbp danielzmbp released this 10 Aug 16:08
· 432 commits to main since this release
  • release: bump version to 0.2.0
  • refactor: remove HDBSCAN, use Leiden exclusively
  • fix: correct embedding name mismatch in refinement
  • refactor: remove unused refinement functions
  • refactor: clean up unnecessary improvement comments
  • docs: restructure installation
  • add miniprot dependency and improve error handling
  • perf: parallelize Leiden k-NN graph construction
  • fix: cleanup build config and docs consistency
  • add: generated version file
  • fix: handle GPU import exceptions gracefully
  • fix: remove GPU pip extras, add conda install docs
  • refactor: move plotting to optional dependencies
    Full Changelog: v0.1.5...v0.2.0