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seqcounter 0.1

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@duceppemo duceppemo released this 31 Oct 01:49
· 22 commits to main since this release
v0.1
6a114d6

The original clone-and-run version of seqcounter: seqcounter.py plus seqcounter_methods.py, counting occurrences of reference sequences in fastq or fasta input with Seal from BBTools.

Install by cloning the repository, as the README describes:

conda create -n seqcounter -y -c bioconda bbmap pandas psutil
conda activate seqcounter
git clone https://github.com/duceppemo/seqcounter
cd seqcounter
python seqcounter.py -h

This release marks the last state before the repository is packaged, so work that depends on the clone-and-run layout has a fixed point to refer to.

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