v0.19.0

What's Changed

• Restore Measurements reference URL by @Xander-git in #205
• Codex/plotting package cleanup by @Xander-git in #206
• Fix cross-platform pytest failures by @Xander-git in #207
• Remove orientation inspect explanation by @Xander-git in #208
• Optimize Browse UX and bundle libvips by @Xander-git in #209
• fix(cli): four silent data-loss defects in the SLURM chunked-run path by @Xander-git in #210
• Make CLI continuation automatic and crash-safe by @Xander-git in #211
• feat!: OME-Zarr image storage migration (v0.19.0) by @Xander-git in #213
• feat: improve branch orientation zone segmentation by @Xander-git in #214
• Results viewer: Scatter tab by @Xander-git in #215
• Run-state contract, identity schema, and metadata layout inversion by @Xander-git in #217
• feat: merge orientation-zone improvements into main by @Xander-git in #222
• refactor!: make the GUI a private package; phenotypic-gui is the only entry point by @Xander-git in #218
• fix(finalize): project legacy embedded tables at read, and stop recompile rewriting stores by @Xander-git in #221
• feat(post): JoinMetadata, and fix MeasureOrientationZones in CLI stage 3 by @Xander-git in #225
• feat(cli): stage a GpuDetector nested anywhere in the operation tree by @Xander-git in #224
• perf,fix(cli,sdk_): compress the Stage-2 output; refuse a GpuDetector in any parameter shape by @Xander-git in #227
• fix(measure): use ConvexHull.volume for 2D convex area by @Xander-git in #228
• fix(tune): score the detected image, not the pre-detection original by @RNBecker-bien in #226
• ci: shard the nightly full suite per OS; fix Windows import crash in migration by @Xander-git in #229
• fix(color): converge the colour-checker geometric median, and fix the Weiszfeld coincident-point singularity by @Xander-git in #230
• fix(cli): treat an aged-out SLURM job as finished, not unknown by @Xander-git in #231
• feat: identity-bound directory I/O, unblocking --mode recompile and Browse on Windows by @Xander-git in #232
• test(gui): fix builder Viv preview e2e tests wiped by lazy builder build by @Xander-git in #234
• feat(color): CalibrateColorRpcc — in-frame colour-checker correction, and one shared ΔE2000 medoid by @Xander-git in #235
• fix(plotting): declare @figure's backend, publish HTML alongside PNG, record plot failures by @Xander-git in #236
• fix(cli): judge only each task's latest sacct attempt by @Xander-git in #237
• feat(color): calibration tile overlay figure for CalibrateColorRpcc by @Xander-git in #238
• feat: store per-image figures inside each OME-Zarr store, in dated per-run folders by @Xander-git in #239
• Seed the --pipeline copy into deliverables/ instead of the output root by @Xander-git in #240
• feat: CalibrateColorRpcc ΔE00 bar plot + 16-bit-safe tile overlay by @Xander-git in #241
• fix(cli): republish a re-measured image under the worker's SLURM generation by @Xander-git in #242
• feat!: texture columns Texture_{NN}px-{deg###|avg}-{Feature}; MeasureTexture takes one scale by @Xander-git in #243
• Revert "feat!: texture columns Texture_{NN}px-{deg###|avg}-{Feature}; MeasureTexture takes one scale" by @Xander-git in #246
• refactor(measure): zone-measure helpers in sdk_, operation-only helpers on the class by @Xander-git in #244
• feat(measure): MeasureNeighborDist nearest-object columns; NeighborDist_* header rename by @Xander-git in #245
• feat(cli): log each finalizer step's start and duration by @Xander-git in #247
• feat(measure)!: MeasureSize is the single source of colony size; 0.20.0 by @Xander-git in #248
• CLI run preflight: catch incompatible configs before any image runs by @Xander-git in #249

New Contributors

• @RNBecker-bien made their first contribution in #226

Full Changelog: v0.18.1...v0.19.0