Replace sphinx napoleon for numpydoc #381
Workflow file for this run
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| # Build the documentation and deploy to GitHub Pages using GitHub Actions. | |
| # | |
| # NOTE: Pin actions to a specific commit to avoid having the authentication | |
| # token stolen if the Action is compromised. See the comments and links here: | |
| # https://github.com/pypa/gh-action-pypi-publish/issues/27 | |
| # | |
| name: docs | |
| # Only build PRs, the main branch, and releases. Pushes to branches will only | |
| # be built when a PR is opened. This avoids duplicated buids in PRs comming | |
| # from branches in the origin repository (1 for PR and 1 for push). | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| release: | |
| types: | |
| - published | |
| # Use bash by default in all jobs | |
| defaults: | |
| run: | |
| # The -l {0} is necessary for conda environments to be activated | |
| # But this breaks on MacOS if using actions/setup-python: | |
| # https://github.com/actions/setup-python/issues/132 | |
| shell: bash -l {0} | |
| jobs: | |
| ############################################################################# | |
| # Build the docs | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| REQUIREMENTS: env/requirements-docs.txt env/requirements-build.txt | |
| PYTHON: "3.12" | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE | |
| - name: Checkout | |
| uses: actions/checkout@v4.1.3 | |
| with: | |
| # Need to fetch more than the last commit so that setuptools-scm can | |
| # create the correct version string. If the number of commits since | |
| # the last release is greater than this, the version still be wrong. | |
| # Increase if necessary. | |
| fetch-depth: 100 | |
| # The GitHub token is preserved by default but this job doesn't need | |
| # to be able to push to GitHub. | |
| persist-credentials: false | |
| # Need the tags so that setuptools-scm can form a valid version number | |
| - name: Fetch git tags | |
| run: git fetch origin 'refs/tags/*:refs/tags/*' | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| channels: conda-forge,defaults | |
| - name: Collect requirements | |
| run: | | |
| echo "Install Dependente to capture dependencies:" | |
| python -m pip install dependente==0.3.0 | |
| echo "" | |
| echo "Capturing run-time dependencies:" | |
| dependente --source install > requirements-full.txt | |
| echo "" | |
| echo "Capturing dependencies from:" | |
| for requirement in $REQUIREMENTS | |
| do | |
| echo " $requirement" | |
| cat $requirement >> requirements-full.txt | |
| done | |
| echo "" | |
| echo "Collected dependencies:" | |
| cat requirements-full.txt | |
| - name: Install requirements | |
| run: conda install --quiet --file requirements-full.txt python==$PYTHON | |
| - name: List installed packages | |
| run: conda list | |
| - name: Build source and wheel distributions | |
| run: | | |
| make build | |
| echo "" | |
| echo "Generated files:" | |
| ls -lh dist/ | |
| - name: Install the package | |
| run: pip install --no-deps dist/*.whl | |
| - name: Cache the Ensaio datasets | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ runner.temp }}/cache/ensaio | |
| # Use a constant key to reuse the datasets across all jobs | |
| key: ensaio | |
| - name: Build the documentation | |
| run: make -C doc clean all | |
| env: | |
| # Fetch the data from the GitHub releases to avoid overloading Zenodo | |
| ENSAIO_DATA_FROM_GITHUB: true | |
| # Define directory where sample data will be stored | |
| ENSAIO_DATA_DIR: ${{ runner.temp }}/cache/ensaio/ | |
| # Store the docs as a build artifact so we can deploy it later | |
| - name: Upload HTML documentation as an artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs-${{ github.sha }} | |
| path: doc/_build/html | |
| ############################################################################# | |
| # Publish the documentation to gh-pages | |
| publish: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| if: github.event_name == 'release' || github.event_name == 'push' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4.1.3 | |
| # Fetch the built docs from the "build" job | |
| - name: Download HTML documentation artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: docs-${{ github.sha }} | |
| path: doc/_build/html | |
| - name: Checkout the gh-pages branch in a separate folder | |
| uses: actions/checkout@1d96c772d19495a3b5c517cd2bc0cb401ea0529f | |
| with: | |
| ref: gh-pages | |
| # Checkout to this folder instead of the current one | |
| path: deploy | |
| # Download the entire history | |
| fetch-depth: 0 | |
| - name: Push the built HTML to gh-pages | |
| run: | | |
| # Detect if this is a release or from the main branch | |
| if [[ "${{ github.event_name }}" == "release" ]]; then | |
| # Get the tag name without the "refs/tags/" part | |
| version="${GITHUB_REF#refs/*/}" | |
| else | |
| version=dev | |
| fi | |
| echo "Deploying version: $version" | |
| # Make the new commit message. Needs to happen before cd into deploy | |
| # to get the right commit hash. | |
| message="Deploy $version from $(git rev-parse --short HEAD)" | |
| cd deploy | |
| # Need to have this file so that Github doesn't try to run Jekyll | |
| touch .nojekyll | |
| # Delete all the files and replace with our new set | |
| echo -e "\nRemoving old files from previous builds of ${version}:" | |
| rm -rvf ${version} | |
| echo -e "\nCopying HTML files to ${version}:" | |
| cp -Rvf ../doc/_build/html/ ${version}/ | |
| # If this is a new release, update the link from /latest to it | |
| if [[ "${version}" != "dev" ]]; then | |
| echo -e "\nSetup link from ${version} to 'latest'." | |
| rm -f latest | |
| ln -sf ${version} latest | |
| fi | |
| # Stage the commit | |
| git add -A . | |
| echo -e "\nChanges to be applied:" | |
| git status | |
| # Configure git to be the GitHub Actions account | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| git config user.name "github-actions[bot]" | |
| # If this is a dev build and the last commit was from a dev build | |
| # (detect if "dev" was in the previous commit message), reuse the | |
| # same commit | |
| if [[ "${version}" == "dev" && `git log -1 --format='%s'` == *"dev"* ]]; then | |
| echo -e "\nAmending last commit:" | |
| git commit --amend --reset-author -m "$message" | |
| else | |
| echo -e "\nMaking a new commit:" | |
| git commit -m "$message" | |
| fi | |
| # Make the push quiet just in case there is anything that could leak | |
| # sensitive information. | |
| echo -e "\nPushing changes to gh-pages." | |
| git push -fq origin gh-pages 2>&1 >/dev/null | |
| echo -e "\nFinished uploading generated files." |