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Addressing some comments from PR #2071 #14

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Addressing some comments from PR #2071 #14

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Commits on Feb 26, 2019

  1. empty lines

    @tjhei
    tjhei committed Feb 26, 2019
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  2. Make minor fixes of signature and prm files

    @class4kayaker
    class4kayaker committed Feb 26, 2019
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  3. Clarify variable names

    @class4kayaker
    class4kayaker committed Feb 26, 2019
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  4. Fix indentation

    @class4kayaker
    class4kayaker committed Feb 26, 2019
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  5. Merge pull request geodynamics#835 from class4kayaker/vofinterfaceSig 

    Add VoF Interface tracking
    @tjhei
    tjhei committed Feb 26, 2019
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Commits on Mar 1, 2019

  1. fix characters needing escaping

    @tjhei
    tjhei committed Mar 1, 2019
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  2. update parameters

    @tjhei
    tjhei committed Mar 1, 2019
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  3. Output dynamic topography as point-wise vector

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  4. Address comments

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  5. Address comments

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  6. Merge pull request geodynamics#2829 from tjhei/gravity_postp_warn 

    avoid warning in gravity point postprocessor
    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  7. Add new heat flux map option with higher resolution

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  8. Only compute heat flux at boundaries

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  9. Address comments

    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  10. Merge pull request geodynamics#2834 from tjhei/maintenance_mar19 

    update parameters
    @gassmoeller
    gassmoeller committed Mar 1, 2019
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  11. Merge pull request geodynamics#2791 from gassmoeller/dynamic_topograp… 

    …hy_point_wise_vector

Output dynamic topography as point-wise vector
    @MFraters
    MFraters committed Mar 1, 2019
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  12. Merge pull request geodynamics#2792 from gassmoeller/geoid_point_wise… 

    …_vector

Write geoid output point-wise
    @naliboff
    naliboff committed Mar 1, 2019
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  13. Merge pull request geodynamics#2784 from gassmoeller/fix_particle_int… 

    …erpolation

Slightly improve accuracy of particle interpolation for active particles in time-varying flow.
    @naliboff
    naliboff committed Mar 1, 2019
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  14. Merge pull request geodynamics#2787 from gassmoeller/heat_flux_point_… 

    …wise_vector

Add a higher resolution heat flux visualization postprocessor
    @MFraters
    MFraters committed Mar 1, 2019
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Commits on Mar 4, 2019

  1. add cmake compile commands output.

    @MFraters
    MFraters committed Mar 4, 2019
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  2. Merge pull request geodynamics#2835 from MFraters/add_compile_command… 

    …s_to_cmake

add cmake compile commands output.
    @tjhei
    tjhei committed Mar 4, 2019
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  3. set minimum required cmake version 

    It turns out that we do not support 2.8.8 as advertised, but that we
need 2.8.12 (confirmed working).
While here, fix a few weird looking CMakeLists.txt files (missing
headers)
    @tjhei
    tjhei committed Mar 4, 2019
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Commits on Mar 5, 2019

  1. Minor textual updates.

    @bangerth
    bangerth committed Mar 5, 2019
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  2. Merge pull request geodynamics#2837 from bangerth/fixes 

    Minor textual updates.
    @naliboff
    naliboff committed Mar 5, 2019
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  3. Merge pull request geodynamics#2836 from tjhei/cmake_min_req 

    set minimum required cmake version
    @gassmoeller
    gassmoeller committed Mar 5, 2019
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  4. Avoid a deprecated symbol.

    @bangerth
    bangerth committed Mar 5, 2019
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  5. update copyright years

    @tjhei
    tjhei committed Mar 5, 2019
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  6. Merge pull request geodynamics#2838 from bangerth/deprecation 

    Avoid a deprecated symbol.
    @tjhei
    tjhei committed Mar 5, 2019
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  7. Avoid use of a deprecated header file.

    @bangerth
    bangerth committed Mar 5, 2019
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  8. Merge pull request geodynamics#2839 from tjhei/copyright_years 

    update copyright years
    @bangerth
    bangerth committed Mar 5, 2019
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  9. Merge pull request geodynamics#2840 from bangerth/deprecation-2 

    Avoid use of a deprecated header file.
    @gassmoeller
    gassmoeller committed Mar 5, 2019
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Commits on Mar 8, 2019

  1. Update changelog

    @anne-glerum
    anne-glerum committed Mar 8, 2019
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  2. gravity point postproc fixes 

    - fix wrong type for number of points
- documentation fixes
    @tjhei
    tjhei committed Mar 8, 2019
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  3. fix clang warning 

    clang 6 warns about an array access out of bounds when instantiating for
dim=2. This is of course not a problem as this code is only executed for
dim=3. Silence the warning by using dim-1 instead of 2.
    @tjhei
    tjhei committed Mar 8, 2019
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  4. remove uncaught_exceptions logic 

    I think this logic is unnecessary as .reset() is safe to call in any
situation (we do not have any "on destruction" printing enabled).

I can into a problem with clang 6 with gcc's libstdc++ with version 5.4:
uncaught_exceptions() is not declared, but the version is reported as
c++17.
    @tjhei
    tjhei committed Mar 8, 2019
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  5. avoid deprecation warning: constraint_matrix.h

    @tjhei
    tjhei committed Mar 8, 2019
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Commits on Mar 11, 2019

  1. Correct parameter querys

    @class4kayaker
    class4kayaker committed Mar 11, 2019
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Commits on Mar 12, 2019

  1. Merge pull request geodynamics#2842 from anne-glerum/update_changelog 

    Update changelog
    @gassmoeller
    gassmoeller committed Mar 12, 2019
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  2. Merge pull request geodynamics#2844 from tjhei/gravity_point_fixes 

    gravity point postprocessor fixes
    @gassmoeller
    gassmoeller committed Mar 12, 2019
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  3. Merge pull request geodynamics#2847 from tjhei/do_not_include_constra… 

    …int_matrix_header

avoid deprecation warning: constraint_matrix.h
    @gassmoeller
    gassmoeller committed Mar 12, 2019
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  4. Merge pull request geodynamics#2845 from tjhei/dim2_mask_warning 

    fix clang warning
    @gassmoeller
    gassmoeller committed Mar 12, 2019
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Commits on Mar 13, 2019

  1. Merge pull request geodynamics#2848 from class4kayaker/fix_parameters 

    Fix Volume of Fluid visualization plugin
    @tjhei
    tjhei committed Mar 13, 2019
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  2. VoF: add test for graphical output 

    none of the tests trigger graphical output of "volume of fluid values".
Fix this.
    @tjhei
    tjhei committed Mar 13, 2019
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  3. update test output

    @tjhei
    tjhei committed Mar 13, 2019
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  4. print more MPI and deal.II info 

    - in detailed.log
- and some at runtime
    @tjhei
    tjhei committed Mar 13, 2019
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Commits on Mar 18, 2019

  1. Merge pull request geodynamics#2850 from tjhei/print_dealii_info 

    print more MPI and deal.II info
    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  2. Merge pull request geodynamics#2846 from tjhei/no_uncaught_exceptions 

    remove uncaught exceptions handling
    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  3. Merge pull request geodynamics#2849 from tjhei/vof_viz_test 

    VoF: add test for graphical output
    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  4. Enable output interpolation by default

    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  5. Remove new default value from cookbook parameter files

    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  6. Disable interpolated output for tests

    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  7. Add changelog

    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  8. Fix typo

    @gassmoeller
    gassmoeller committed Mar 18, 2019
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  9. astyle

    Jeroen Van-Hunen authored and Jeroen Van-Hunen committed Mar 18, 2019
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Commits on Mar 19, 2019

  1. Fix initialization and composition setting for multiple VoF fields

    @class4kayaker
    class4kayaker committed Mar 19, 2019
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  2. Add postprocessor to test for 2 vof fields

    @class4kayaker
    class4kayaker committed Mar 19, 2019
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Commits on Mar 21, 2019

  1. Fix typo

    @anne-glerum
    anne-glerum committed Mar 21, 2019
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Commits on Mar 22, 2019

  1. update documentation on depletion strengthening

    Jeroen Van-Hunen authored and Jeroen Van-Hunen committed Mar 22, 2019
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  2. Merge pull request geodynamics#2856 from anne-glerum/fix_typo_20 

    Fix typo
    @naliboff
    naliboff committed Mar 22, 2019
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  3. Merge pull request geodynamics#2854 from jvanhunen/depletion-strength… 

    …ening

depletion strengthening in melt_global material model
    @jdannberg
    jdannberg committed Mar 22, 2019
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  4. Add entropy viscosity statistics postprocessor

    @gassmoeller
    gassmoeller committed Mar 22, 2019
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Commits on Mar 24, 2019

  1. Merge pull request geodynamics#2841 from gassmoeller/enable_output_in… 

    …terpolation_by_default

Enable output interpolation by default
    @MFraters
    MFraters committed Mar 24, 2019
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Commits on Mar 25, 2019

  1. Add option for higher order output

    @gassmoeller
    gassmoeller committed Mar 25, 2019
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  2. Rename test. Add figure.

    @gassmoeller
    gassmoeller committed Mar 25, 2019
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  3. Merge pull request geodynamics#2851 from gassmoeller/add_option_for_h… 

    …igher_order_output

Add option for higher order output
    @MFraters
    MFraters committed Mar 25, 2019
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Commits on Mar 26, 2019

  1. doc: fix two small errors

    @tjhei
    tjhei committed Mar 26, 2019
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  2. Derive test from artificial viscosity

    @gassmoeller
    gassmoeller committed Mar 26, 2019
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  3. Merge pull request geodynamics#2860 from tjhei/doc_fixes 

    doc: fix two small errors
    @MFraters
    MFraters committed Mar 26, 2019
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  4. Merge pull request geodynamics#2857 from gassmoeller/add_entropy_visc… 

    …osity_statistics_postprocessor

Add entropy viscosity statistics postprocessor
    @naliboff
    naliboff committed Mar 26, 2019
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Commits on Mar 27, 2019

  1. Update Buiter et al. 2008 benchmarks

    @naliboff
    naliboff committed Mar 27, 2019
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  2. Merge pull request geodynamics#2863 from naliboff/fix_buiter_etal_ben… 

    …chmark

Update Buiter et al. 2008 benchmarks
    @tjhei
    tjhei committed Mar 27, 2019
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  3. benchmarks: various fixes

    @tjhei
    tjhei committed Mar 27, 2019
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  4. update check scripts

    @tjhei
    tjhei committed Mar 27, 2019
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  5. fix check.sh

    @tjhei
    tjhei committed Mar 27, 2019
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Commits on Mar 28, 2019

  1. fix messed up output name

    @tjhei
    tjhei committed Mar 28, 2019
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  2. fix solver name in script

    @tjhei
    tjhei committed Mar 28, 2019
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  3. Merge pull request geodynamics#2862 from tjhei/benchmark_fixes 

    benchmarks: various fixes
    @naliboff
    naliboff committed Mar 28, 2019
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Commits on Mar 29, 2019

  1. Correct indentation

    @class4kayaker
    class4kayaker committed Mar 29, 2019
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Commits on Apr 1, 2019

  1. maintenance for April 2019

    @tjhei
    tjhei committed Apr 1, 2019
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  2. Merge pull request geodynamics#2855 from class4kayaker/multi_vof_debug 

    Multi VoF field correction
    @gassmoeller
    gassmoeller committed Apr 1, 2019
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  3. Merge pull request geodynamics#2864 from tjhei/maint_apr19 

    maintenance for April 2019
    @gassmoeller
    gassmoeller committed Apr 1, 2019
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Commits on Apr 3, 2019

  1. Adjust location of imposing bounds on vol fractions in composition init

    @class4kayaker
    class4kayaker committed Apr 3, 2019
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  2. timing sparsity patterns

    tcclevenger committed Apr 3, 2019
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  3. Merge pull request geodynamics#2865 from tcclevenger/add_sparsity_tim… 

    …ings

timing sparsity pattern setup
    @gassmoeller
    gassmoeller committed Apr 3, 2019
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  4. Add test for composition intialization

    @class4kayaker
    class4kayaker committed Apr 3, 2019
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Commits on Apr 4, 2019

  1. Correct test setup and output

    @class4kayaker
    class4kayaker committed Apr 4, 2019
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Commits on Apr 5, 2019

  1. Merge pull request geodynamics#2866 from class4kayaker/fix_compositio… 

    …n_init

Adjust location of imposing bounds on vol fractions in composition init
    @gassmoeller
    gassmoeller committed Apr 5, 2019
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Commits on Apr 6, 2019

  1. use http git submodule for WorldBuilder 

    The submodule is currently specified to use ssh. When somebody clones
aspect with ``git clone --recursive
https://github.com/geodynamics/aspect`` it will try to fetch the world
builder using ssh (and ask for authentication or fail).
Change this.
I don't see any disadvantage of doing so.
    @tjhei
    tjhei committed Apr 6, 2019
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  2. CMakeLists.txt: prefer binary include dir 

    List the build/include dir before ./include to give it preference over
the source directory. Reasoning: I had a stray
include/aspect/revision.h (maybe from an accidental in-source build?)
that was used instead of the current generated one. As a result,
ASPECT would show the wrong git branch/version/etc..
    @tjhei
    tjhei committed Apr 6, 2019
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  3. Avoid deprecated prepare_serialization() 

    this function got renamed on deal.II master
    @tjhei
    tjhei committed Apr 6, 2019
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Commits on Apr 8, 2019

  1. Merge pull request geodynamics#2868 from tjhei/world_builder_https 

    use http git submodule for WorldBuilder
    @MFraters
    MFraters committed Apr 8, 2019
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  2. Merge pull request geodynamics#2871 from tjhei/deprecated_serializati… 

    …on_master

Avoid deprecated prepare_serialization()
    @gassmoeller
    gassmoeller committed Apr 8, 2019
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  3. Merge pull request geodynamics#2870 from tjhei/cmake_prefer_bin_dir 

    CMakeLists.txt: prefer binary include dir
    @gassmoeller
    gassmoeller committed Apr 8, 2019
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Commits on Apr 10, 2019

  1. Fix shear bands benchmark

    @gassmoeller
    gassmoeller committed Apr 10, 2019
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  2. Merge pull request geodynamics#2872 from gassmoeller/fix_shear_bands_… 

    …benchmark_input

Fix shear bands benchmark input and FPE
    @tjhei
    tjhei committed Apr 10, 2019
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  3. Create Jenkinsfile.cig

    @tjesser-ucdavis-edu
    tjesser-ucdavis-edu committed Apr 10, 2019
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  4. fix indentation problems

    @tjhei
    tjhei committed Apr 10, 2019
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  5. update copyright years

    @tjhei
    tjhei committed Apr 10, 2019
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  6. Use arithmetic instead of geometric averaging for determining melt re… 

    …gion
    @gassmoeller
    gassmoeller committed Apr 10, 2019
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  7. Merge pull request geodynamics#2873 from tjesser-ucdavis-edu/master 

    Create Jenkinsfile.cig
    @gassmoeller
    gassmoeller committed Apr 10, 2019
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  8. Merge pull request geodynamics#2874 from tjhei/fixes 

    pre-release fixes
    @gassmoeller
    gassmoeller committed Apr 10, 2019
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  9. Update cotire version

    @gassmoeller
    gassmoeller committed Apr 10, 2019
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  10. Do not allow cotire for cmake >= 3.9

    @gassmoeller
    gassmoeller committed Apr 10, 2019
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Commits on Apr 11, 2019

  1. Update tests

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  2. Address comments

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  3. apply modernize-use-nullptr

    @tjhei
    tjhei committed Apr 11, 2019
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  4. clang-tidy: more checks 

    fix a couple of clang-tidy performance complaints (missing references)

performance-unnecessary-value-param
performance-unnecessary-copy-initialization
    @tjhei
    tjhei committed Apr 11, 2019
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  5. update clang-tidy settings 

    - enable other checks
- update instructions
    @tjhei
    tjhei committed Apr 11, 2019
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  6. Replace std::shared_ptr by std::unique_ptr.

    @bangerth
    bangerth committed Apr 11, 2019
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  7. Replace std::shared_ptr by std::unique_ptr in the heating models.

    @bangerth
    bangerth committed Apr 11, 2019
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  8. Merge pull request geodynamics#2878 from tjhei/tidy-nullptr 

    clang-tidy: apply modernize-use-nullptr
    @tjhei
    tjhei committed Apr 11, 2019
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  9. Merge pull request geodynamics#2880 from tjhei/tidy-info 

    update clang-tidy settings
    @tjhei
    tjhei committed Apr 11, 2019
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  10. Merge pull request geodynamics#2881 from bangerth/shared 

    Replace std::shared_ptr by std::unique_ptr.
    @tjhei
    tjhei committed Apr 11, 2019
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  11. undo for multi-threaded calls

    @tjhei
    tjhei committed Apr 11, 2019
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  12. update bib file 

    update from Mendeley
    @tjhei
    tjhei committed Apr 11, 2019
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  13. Add error message

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  14. Fix non-convergence of a too coarse test

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  15. Adjust default melt scaling threshold and update cookbooks.

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  16. Merge pull request geodynamics#2883 from tjhei/bib-update 

    update bib file
    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  17. Merge pull request geodynamics#2879 from tjhei/tidy-other 

     clang-tidy: more checks
    @gassmoeller
    gassmoeller committed Apr 11, 2019
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  18. Merge pull request geodynamics#2877 from gassmoeller/fix_cotire 

    Fix and update cotire
    @tjhei
    tjhei committed Apr 11, 2019
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  19. Merge pull request geodynamics#2876 from gassmoeller/use_arithmetic_a… 

    …veraging_for_determining_melt_region

Use arithmetic instead of geometric averaging for determining melt region
    @tjhei
    tjhei committed Apr 11, 2019
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  20. Update tests

    @gassmoeller
    gassmoeller committed Apr 11, 2019
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Commits on Apr 12, 2019

  1. Update the description of a parameter.

    @bangerth
    bangerth committed Apr 12, 2019
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  2. cleanup: consistent parameter names 

    found with clang-tidy option
readability-inconsistent-declaration-parameter-name
    @tjhei
    tjhei committed Apr 12, 2019
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Commits on Apr 13, 2019

  1. Merge pull request geodynamics#2885 from bangerth/update-parameter 

    Update the description of a parameter.
    @gassmoeller
    gassmoeller committed Apr 13, 2019
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  2. Merge pull request geodynamics#2886 from tjhei/tidy-inconsistent-names 

    cleanup: consistent parameter names
    @gassmoeller
    gassmoeller committed Apr 13, 2019
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  3. Fix typo

    @gassmoeller
    gassmoeller committed Apr 13, 2019
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  4. Merge pull request geodynamics#2884 from gassmoeller/modify_default_m… 

    …elt_threshold_and_cookbooks

Modify default melt threshold and cookbooks
    @gassmoeller
    gassmoeller committed Apr 13, 2019
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  5. Adjust benchmarks.

    @bangerth
    bangerth committed Apr 13, 2019
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Commits on Apr 14, 2019

  1. clang-tidy: suppress warnings 

    Suppress the three locations where we want to ignore performance-
unnecessary-value-param.
    @tjhei
    tjhei committed Apr 14, 2019
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Commits on Apr 15, 2019

  1. Fix warning

    @gassmoeller
    gassmoeller committed Apr 15, 2019
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  2. Merge pull request geodynamics#2887 from tjhei/tidy-suppress-warning-… 

    …copy

clang-tidy: suppress warnings
    @gassmoeller
    gassmoeller committed Apr 15, 2019
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  3. Merge pull request geodynamics#2888 from gassmoeller/fix_warning 

    Fix a warning
    @tjhei
    tjhei committed Apr 15, 2019
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  4. Add a reference to the ASPECT II paper to the manual.

    @bangerth
    bangerth committed Apr 15, 2019
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  5. Merge pull request geodynamics#2889 from bangerth/manual 

    Add a reference to the ASPECT II paper to the manual.
    @tjhei
    tjhei committed Apr 15, 2019
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Commits on Apr 16, 2019

  1. Use smoother language.

    @bangerth
    bangerth committed Apr 16, 2019
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  2. Merge pull request geodynamics#2890 from bangerth/manual-2 

    Use smoother language.
    @tjhei
    tjhei committed Apr 16, 2019
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  3. fix the maximum horizontal compressive stress plugin.

    @MFraters
    MFraters committed Apr 16, 2019
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  4. Add tests for fixed post-processor.

    @MFraters
    MFraters committed Apr 16, 2019
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  5. patching test two

    @MFraters
    MFraters committed Apr 16, 2019
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  6. Merge pull request geodynamics#2833 from MFraters/fix_maximum_horizon… 

    …tal_compressive_stress

fix the maximum horizontal compressive stress plugin.
    @tjhei
    tjhei committed Apr 16, 2019
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  7. release task: update version and changes.h

    @tjhei
    tjhei committed Apr 16, 2019
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  8. clang-tidy with worldbuilder 

    - WorldBuilder does not run cleanly with our clang-tidy checks, instead
of fixing those, disable it inside contrib/
- fix one nullptr location
    @tjhei
    tjhei committed Apr 16, 2019
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Commits on Apr 17, 2019

  1. Merge pull request geodynamics#2891 from tjhei/tidy-with-worldbuilder 

    clang-tidy with worldbuilder
    @gassmoeller
    gassmoeller committed Apr 17, 2019
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  2. Update world builder with fix against warnings in gcc 5.

    @MFraters
    MFraters committed Apr 17, 2019
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  3. Merge pull request geodynamics#2893 from MFraters/update_world_builder 

    Update world builder with fix against warnings in gcc 5.
    @tjhei
    tjhei committed Apr 17, 2019
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Commits on Apr 20, 2019

  1. Add a note about Louise to the acknowledgments.

    @bangerth
    bangerth committed Apr 20, 2019
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  2. Merge pull request geodynamics#2894 from bangerth/lk 

    Add a note about Louise to the acknowledgments.
    @naliboff
    naliboff committed Apr 20, 2019
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Commits on Apr 21, 2019

  1. cmake: switch to CXX only project 

    Declare the project as a CXX only project and change one of the tests to
be a c++ check (instead of a C check). This change will:
- not check the existence of a c compiler (speed up cmake!)
- stop printing confusing messages (finding gcc for the C language,
while we compile with intel for CXX for example)
- actually perform the include check with CXX
    @tjhei
    tjhei committed Apr 21, 2019
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Commits on Apr 24, 2019

  1. Merge pull request geodynamics#2895 from tjhei/cmake_cxx_only 

    cmake: switch to CXX only project
    @gassmoeller
    gassmoeller committed Apr 24, 2019
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  2. Merge pull request geodynamics#2875 from tjhei/post-release-2.1.0 

    Post release 2.1.0 version bump
    @gassmoeller
    gassmoeller committed Apr 24, 2019
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  3. Merge pull request geodynamics#2756 from gassmoeller/add_steady_tempe… 

    …rature_termination

Add a termination criteria for steady state temperature
    @gassmoeller
    gassmoeller committed Apr 24, 2019
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  4. Add GWB changelog entry.

    @MFraters
    MFraters committed Apr 24, 2019
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Commits on Apr 25, 2019

  1. Merge pull request geodynamics#2882 from bangerth/shared-2 

    Replace std::shared_ptr by std::unique_ptr in the heating models.
    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  2. Add a link to the world builder repo.

    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  3. Add release announcement

    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  4. Add world builder to release message

    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  5. Add a message about the heat flux boundary conditions.

    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  6. Merge pull request geodynamics#2897 from MFraters/add_world_builder_c… 

    …hangelog_entry

Add GWB changelog entry.
    @gassmoeller
    gassmoeller committed Apr 25, 2019
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  7. switch to deal.II 9.0 

    - switch to 9.0 docker image
    @tjhei
    tjhei committed Apr 25, 2019
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  8. update test results

    @tjhei
    tjhei committed Apr 25, 2019
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  9. require 9.0 in CMakeLists.txt

    @tjhei
    tjhei committed Apr 25, 2019
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  10. fix test

    @tjhei
    tjhei committed Apr 25, 2019
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  11. rename particle output files

    @tjhei
    tjhei committed Apr 25, 2019
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  12. update particle test results

    @tjhei
    tjhei committed Apr 25, 2019
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  13. update test results

    @tjhei
    tjhei committed Apr 25, 2019
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  14. update test output

    @tjhei
    tjhei committed Apr 25, 2019
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  15. update image

    @tjhei
    tjhei committed Apr 25, 2019
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  16. adjust new test results

    @tjhei
    tjhei committed Apr 25, 2019
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  17. Use new image for Jenkinsfile.cig

    @gassmoeller @tjhei
    gassmoeller authored and tjhei committed Apr 25, 2019
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  18. Remove some openmpi jenkins options.

    @gassmoeller @tjhei
    gassmoeller authored and tjhei committed Apr 25, 2019
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  19. Adjust melt_transport_compressible_iterative test

    @gassmoeller @tjhei
    gassmoeller authored and tjhei committed Apr 25, 2019
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  20. Merge pull request geodynamics#2896 from gassmoeller/add_release_mess… 

    …age_2.1

Add release announcement
    @tjhei
    tjhei committed Apr 25, 2019
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  21. changelog entry

    @tjhei
    tjhei committed Apr 25, 2019
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  22. Merge pull request geodynamics#2780 from tjhei/periodic_before_hanging 

    constraints: periodic before hanging
    @tjhei
    tjhei committed Apr 25, 2019
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  23. update test results

    @tjhei
    tjhei committed Apr 25, 2019
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Commits on Apr 27, 2019

  1. Merge pull request geodynamics#2738 from tjhei/jenkins-update 

    switch to deal.II 9.0
    @tjhei
    tjhei committed Apr 27, 2019
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  2. check constraints are consistent 

    extend on geodynamics#2780
    @tjhei
    tjhei committed Apr 27, 2019
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  3. enable 9.0 tests

    @tjhei
    tjhei committed Apr 27, 2019
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  4. update test output

    @tjhei
    tjhei committed Apr 27, 2019
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Commits on Apr 29, 2019

  1. update DOI info

    @tjhei
    tjhei committed Apr 29, 2019
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  2. update release tasks

    @tjhei
    tjhei committed Apr 29, 2019
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  3. Merge pull request geodynamics#2899 from tjhei/enable_90_tests 

    enable 9.0 tests
    @gassmoeller
    gassmoeller committed Apr 29, 2019
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  4. Merge pull request geodynamics#2898 from tjhei/check_constraints_cons… 

    …istent

check constraints are consistent
    @gassmoeller
    gassmoeller committed Apr 29, 2019
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  5. Merge pull request geodynamics#2900 from tjhei/cite_info 

    update DOI info
    @gassmoeller
    gassmoeller committed Apr 29, 2019
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Commits on Apr 30, 2019

  1. Merge pull request geodynamics#2902 from tjhei/update_release_tasks 

    update release tasks
    @gassmoeller
    gassmoeller committed Apr 30, 2019
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  2. Increase time for tests

    @gassmoeller
    gassmoeller committed Apr 30, 2019
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  3. Update announcement lists

    @gassmoeller
    gassmoeller committed Apr 30, 2019
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  4. Update Jenkinsfile. Remove Kubernetes file.

    @gassmoeller
    gassmoeller committed Apr 30, 2019
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Commits on May 1, 2019

  1. Merge pull request geodynamics#2905 from gassmoeller/update_release_t… 

    …asklist

Update announcement lists
    @bangerth
    bangerth committed May 1, 2019
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  2. no temp for Stokes only

    tcclevenger committed May 1, 2019
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  3. Move cleanup into correct post stage

    @gassmoeller
    gassmoeller committed May 1, 2019
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Commits on May 2, 2019

  1. Add a changelog entry.

    @bangerth
    bangerth committed May 2, 2019
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  2. Convert more shared_ptr -> unique_ptr.

    @bangerth
    bangerth committed May 2, 2019
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  3. Add a changelog entry.

    @bangerth
    bangerth committed May 2, 2019
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  4. Merge pull request geodynamics#2907 from bangerth/add-changelog 

    Add a changelog entry.
    @gassmoeller
    gassmoeller committed May 2, 2019
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  5. Merge pull request geodynamics#2903 from tcclevenger/temperature_spar… 

    …sity

no temperature matrix for Stokes only
    @gassmoeller
    gassmoeller committed May 2, 2019
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  6. Merge pull request geodynamics#2908 from bangerth/shared 

    Convert more shared_ptr -> unique_ptr.
    @gassmoeller
    gassmoeller committed May 2, 2019
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Commits on May 3, 2019

  1. Merge pull request geodynamics#2906 from gassmoeller/jenkins-update 

    Jenkins update
    @tjhei
    tjhei committed May 3, 2019
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  2. bib typo

    @tjhei
    tjhei committed May 3, 2019
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  3. update parameters

    @tjhei
    tjhei committed May 3, 2019
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  4. Merge pull request geodynamics#2909 from tjhei/maintenance_may19 

    update parameters
    @bangerth
    bangerth committed May 3, 2019
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Commits on May 5, 2019

  1. update make_cite_html.py 

    - sort entries to avoid writing them in random order
    @tjhei
    tjhei committed May 5, 2019
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Commits on May 6, 2019

  1. cache entries, correct text formatting

    @tjhei
    tjhei committed May 6, 2019
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  2. use emplace_back

    @tjhei
    tjhei committed May 6, 2019
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  3. Merge pull request geodynamics#2913 from tjhei/use_emplace_back 

    use emplace_back
    @gassmoeller
    gassmoeller committed May 6, 2019
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  4. Merge pull request geodynamics#2912 from tjhei/update_make_cite_html 

    update make_cite_html.py
    @gassmoeller
    gassmoeller committed May 6, 2019
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Commits on May 7, 2019

  1. Update dockerfile for new base image

    @gassmoeller
    gassmoeller committed May 7, 2019
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  2. Merge pull request geodynamics#2916 from gassmoeller/update_dockerfile 

    Update dockerfile for new base image
    @tjhei
    tjhei committed May 7, 2019
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  3. Update docker instructions for geodynamics/aspect

    @gassmoeller
    gassmoeller committed May 7, 2019
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  4. Update release tasklist to include docker image

    @gassmoeller
    gassmoeller committed May 7, 2019
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  5. Merge pull request geodynamics#2918 from gassmoeller/update_docker_in… 

    …structions_cig

Update docker instructions to geodynamics/aspect
    @tjhei
    tjhei committed May 7, 2019
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  6. Simplify test that caused testers to break because of too many MPI pr… 

    …ocesses
    @gassmoeller
    gassmoeller committed May 7, 2019
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Commits on May 8, 2019

  1. Fix some typos

    @anne-glerum
    anne-glerum committed May 8, 2019
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  2. Merge pull request geodynamics#2919 from gassmoeller/fix_slow_test 

    Simplify test that caused testers to break because of too many MPI processes
    @tjhei
    tjhei committed May 8, 2019
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  3. Increase GMRES restart length for advection solver

    @gassmoeller
    gassmoeller committed May 8, 2019
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  4. Update tests

    @gassmoeller
    gassmoeller committed May 8, 2019
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  5. Fix accidental change

    @gassmoeller
    gassmoeller committed May 8, 2019
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  6. Fix interpolation at longitude boundary in gplates plugin

    @gassmoeller
    gassmoeller committed May 8, 2019
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  7. Merge pull request geodynamics#2920 from anne-glerum/fix_typos_21 

    Fix some typos
    @gassmoeller
    gassmoeller committed May 8, 2019
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  8. Update tests

    @gassmoeller
    gassmoeller committed May 8, 2019
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Commits on May 9, 2019

  1. Remove particle output files

    @gassmoeller
    gassmoeller committed May 9, 2019
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  2. Remove particle classes

    @gassmoeller
    gassmoeller committed May 9, 2019
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  3. Remove outdated precompile directives

    @gassmoeller
    gassmoeller committed May 9, 2019
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  4. Merge pull request geodynamics#2924 from gassmoeller/remove_dealii_pa… 

    …rticle_code

Remove particle code that is now in deal.II
    @naliboff
    naliboff committed May 9, 2019
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Commits on May 10, 2019

  1. Address comments

    @gassmoeller
    gassmoeller committed May 10, 2019
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  2. Address comments

    @gassmoeller
    gassmoeller committed May 10, 2019
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  3. Update tests after comments

    @gassmoeller
    gassmoeller committed May 10, 2019
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  4. Rephrase parameter documentation

    @gassmoeller
    gassmoeller committed May 10, 2019
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  5. Merge pull request geodynamics#2923 from gassmoeller/fix_issue_2315 

    Fix issue 2315
    @naliboff
    naliboff committed May 10, 2019
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  6. Merge pull request geodynamics#2922 from gassmoeller/fix_issue_1243 

    Increase GMRES restart length for advection solver
    @MFraters
    MFraters committed May 10, 2019
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  7. Add missing test results

    @naliboff
    naliboff committed May 10, 2019
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  8. Merge pull request geodynamics#2927 from naliboff/add_missing_visco_p… 

    …lastic_tests

Add missing test results
    @gassmoeller
    gassmoeller committed May 10, 2019
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  9. Remove some more ifdefs

    @gassmoeller
    gassmoeller committed May 10, 2019
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  10. Merge pull request geodynamics#2928 from gassmoeller/remove_more_part… 

    …icle_code

Remove some more ifdefs
    @naliboff
    naliboff committed May 10, 2019
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Commits on May 15, 2019

  1. Add in mesh deformation files from Rene's free_extension branch, and … 

    …update to work with dealii v9.0.1 and ASPECT 2.1.0
    djneu committed May 15, 2019
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  2. Include changes to other files for mesh deformation

    djneu committed May 15, 2019
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  3. Naming scheme changes: FreeSurfaceHandler to MeshDeformationHandler, … 

    …and relevant parameter section name changes as well.
    djneu committed May 15, 2019
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Commits on May 17, 2019

  1. Astyle changes

    djneu committed May 17, 2019
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  2. Address comment styling issues from pr 2071

    djneu committed May 17, 2019
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Commits on May 26, 2019

  1. Rename free surface to mesh deformation

    @anne-glerum
    anne-glerum committed May 26, 2019
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  2. Rename more

    @anne-glerum
    anne-glerum committed May 26, 2019
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  3. Move check pressure normalization

    @anne-glerum
    anne-glerum committed May 26, 2019
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Commits on May 27, 2019

  1. Change checks boundary condition compatibility

    @anne-glerum
    anne-glerum committed May 27, 2019
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  2. Merge pull request #14 from anne-glerum/mesh_deformation_dn 

    Mesh deformation dn
    @Djneu
    Djneu committed May 27, 2019
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  3. Correct free surface subsection header

    @anne-glerum
    anne-glerum committed May 27, 2019
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  4. Fix mesh velocity constraints on mesh deformation boundaries

    @anne-glerum
    anne-glerum committed May 27, 2019
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  5. Astyle, add assert nr of def models, address some comments

    @anne-glerum
    anne-glerum committed May 27, 2019
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  6. Merge pull request #15 from anne-glerum/mesh_deformation_dn 

    Mesh deformation dn
    @Djneu
    Djneu committed May 27, 2019
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