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@gibbslab

Bioinformatics and Systems Biology Laboratory

Institute for Genetics - Universidad Nacional de Colombia

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  1. g2f g2f Public

    An R package to find the gaps in metabolic networks, and fill it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also include the option to dow…

    R 5 3

  2. exp2flux exp2flux Public

    An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in d…

    R 3

  3. biobash biobash Public

    Forked from ampinzonv/biobash

    Common BASH routines for computational biology

    Shell 3 2

  4. minval minval Public

    An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBM…

    R 2 1

  5. coexnet coexnet Public

    An R package to build CO-EXpression NETworks from Microarray Data

    R 1 1

  6. GSMs GSMs Public

    Official Repository for Genome Scale Models created by our Team

    1 1

Repositories

Showing 10 of 18 repositories
  • GABA_reconstrucction Public

    GABA_reconstrucction

    gibbslab/GABA_reconstrucction’s past year of commit activity
    MATLAB 0 0 0 0 Updated Sep 11, 2024
  • GSMs Public

    Official Repository for Genome Scale Models created by our Team

    gibbslab/GSMs’s past year of commit activity
    1 1 0 0 Updated Sep 11, 2024
  • Carnation_transcriptome Public

    RNAseq data for Carnation roots Cultivars Golem and Mizuki.

    gibbslab/Carnation_transcriptome’s past year of commit activity
    0 0 0 0 Updated Apr 19, 2024
  • golemdata Public

    RNAseq data for golem sequencing.

    gibbslab/golemdata’s past year of commit activity
    0 0 0 0 Updated Apr 29, 2023
  • rnaseq-reference Public

    Pipeline used to analyse RNA sequencing data obtained from organisms with a reference genome and annotation

    gibbslab/rnaseq-reference’s past year of commit activity
    Shell 1 1 0 1 Updated Sep 26, 2022
  • fetch_NGS Public

    Pipeline to fetch metadata and raw FastQ files from different databases

    gibbslab/fetch_NGS’s past year of commit activity
    Shell 0 1 0 0 Updated Sep 26, 2022
  • biobash Public Forked from ampinzonv/biobash

    Common BASH routines for computational biology

    gibbslab/biobash’s past year of commit activity
    Shell 3 MIT 3 0 0 Updated May 23, 2022
  • minval Public

    An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.

    gibbslab/minval’s past year of commit activity
    R 2 1 0 0 Updated May 18, 2022
  • GEM-multiomic-integrator Public

    MatLab ToolBox for integration of multiple omic sources to a genome-scale metabolic model

    gibbslab/GEM-multiomic-integrator’s past year of commit activity
    MATLAB 0 0 0 0 Updated Apr 12, 2022
  • vigilant Public

    Pipeline for the assembly and analysis of SARS-CoV2 genomes in Colombia

    gibbslab/vigilant’s past year of commit activity
    Shell 0 1 0 0 Updated Nov 20, 2021
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