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v2.0.0

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@tomwardio tomwardio released this 11 Nov 13:49

Added

  • AlphaGenome 2 model API (alphagenome.models.v2), supporting
    reference-condition and single-cell expression-conditioned predictions,
    variant and interval scoring, cell embeddings, and input gradients.
  • GeneExpressionData container for gene-level expression predictions.
  • Enhancer-to-gene scoring and calling utilities
    (alphagenome.interpretation.enhancer_scoring).
  • GeneExpression, OverlaidGeneExpression, and EnhancerArcs plot
    components.
  • filter_to_observed helper on TrackData and JunctionData.
  • Tutorials, vignettes, and user guides for AlphaGenome 2.

Removed

  • Deprecated alphagenome.models.* v1 aliases; import from
    alphagenome.models.v1 instead.