Look for ASE in exonic loci alone

[gatoravi]

• Annotate polymorphisms before looking for ASE at those sites.

[coveralls]

Coverage decreased (-0.2%) to 85.511% when pulling d66471e on gatoravi:ase_exonic_only into 1cd2933 on griffithlab:master.

[malachig]

As discussed in our last meeting, I think this is a good option, especially for species with high quality reference transcriptomes (like human). Will be interesting to see what effect this has on the results and run time.

[coveralls]

Coverage decreased (-0.2%) to 85.511% when pulling 64f2ae3 on gatoravi:ase_exonic_only into 1cd2933 on griffithlab:master.

[coveralls]

Coverage increased (+2.9%) to 88.636% when pulling 8a96582 on gatoravi:ase_exonic_only into 1cd2933 on griffithlab:master.

[coveralls]

Coverage increased (+2.9%) to 88.636% when pulling 9954b3c on gatoravi:ase_exonic_only into 1cd2933 on griffithlab:master.