growthcleanr 3.0.0

growthcleanr 3.0.0 is a major update addressing usability, cleaning performance, efficiency, documentation, and customization. It includes a new Shiny app (growthcleanr_app()).

• What changed: NEWS.md
• Upgrading from 2.2.3: vignette("experienced-start-here")
• Documentation: https://growthcleanr.org

Install from GitHub until the CRAN release is available:
remotes::install_github("growth-data-tools/growthcleanr@v3.0.0")

The 2.2.3 code remains on the v2-legacy branch and at tag v2.2.3.

v2.1.1

Changed

• Fixed missing adult measurements to be labeled "Missing" in output (#119)
• Added tests for missingness in adult output
• Fixed missing "-RV" codes in adult output
• Corrected contributor names in DESCRIPTION (#120)
• Added email for Dan Chudnov in DESCRIPTION (#95)

v2.1.0

Added

• Use dependabot to update GitHub workflow action versions (#94)
• Use GitHub action to build and publish container image (#101)

Changed

• Updated ext_bmiz() to match Dec 2022 NCHS guidelines (#98)
• New options to keep dates, columns, unmatched rows in longwide() (#71)
• Updated CITATION to match new CRAN requirements
• Updated Dockerfile to build from repo, not CRAN

v2.0.3

Added

• CRAN release checklist now added under Developer Guidelines vignette (#99)

Changed

• All possible levels for cleangrowth() output factor now enumerated
• Updated maintainer to Carrie Daymont

v2.0.2

Added

• Package now available on CRAN: https://cran.r-project.org/package=growthcleanr

Changed

• Several updates for CRAN deployment: improved example/test runtimes, text
  corrections (#82); switched examples to use donttest, added CRAN comments
  file, updated .Rbuildignore (#84)
• Documentation updated with CRAN install (#86), fixed links (#85)
• Updated GitHub check workflow (#80) and pkgdown workflow

v2.0.1

Changes

• Updated DESCRIPTION, including authors, URLS, title, description, and imports
• Compressed files in inst/extdata for size requirements; added R.utils as import to support fread() for .gz files
• Updated license year

v2.0.0

Added

• Support for cleaning adult (18-65) observations with adult_cutpoint and
  weightcap options (mitre#17, others)
• Added documentation describing adult algorithm, examples, and exclusions
  (#30), next steps (#63)
• Added tests supporting adult observations (#49)

Changed

• Removed BMI calculation from longwide(), added simple_bmi() (#47)
• Enhanced gcdriver.R to support adult options, parallel operation
  (mitre#23)
• Refreshed syngrowth synthetic test data, now includes adults (#50)
• Reorganized documentation from README, now using
  pkgdown (#30)
• Improved code layout to pass CHECK cleanly (#18, #60)

v1.2.6

Changed

• Corrected four duplicated age-rows in NHANES reference medians (#40)
• Added missing non-newborn constraint in 14h.ii (thanks Lusha Cao)
• Removed Hmisc dependency (#36)
• Replaced clean_value result column name in docs with gcr_result for
  clarity (#35)

v1.2.5

Changed

• Updated behavior of sd.recenter option to include new NHANES reference medians and explicit specification with "NHANES" or "derive" (mitre#9)
• Switched README.md to be generated from README.Rmd w/knitr (thanks @mcanouil) (#17)
• Switched to use file.path() more consistently in R/growth.R

Added

• Added inst/extdata/nhanes-reference-medians.csv, reference medians for recentering derived from NHANES (described in README)