v2.0.10

• run mode:
  • Deprecated use of fragments on the same chromosome for fragmented projection assembly. The legacy behavior can be enable with the --enable_same_contigs flag.
• integrate mode:
  • Fixed gene disjointing problem leading to paralogs and lost orthologous overlapping functional orthologs form independent gene units;
  • Iterative novelty filter for paralogous and lost projections to minimize the number of added projections;

For the full list of code changes, see changelog.md .