Code

Linear pool method#26

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elray1 merged 60 commits intomainhubverse-org/hubEnsembles:mainfrom linear_pool-methodhubverse-org/hubEnsembles:linear_pool-methodCopy head branch name to clipboardAug 16, 2023

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Commits on Jul 12, 2023

• write linear_pool mean, cdf, pmf output type case

  

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Commits on Jul 20, 2023

• write linear_pool quantile output type case

  

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Commits on Jul 21, 2023

• add weights functionality to linear_pool quantile output type case

  

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Commits on Jul 25, 2023

• fix linear_pool quantile output type case

  

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• update linear_pool documentation

  

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• start writing tests for linear_pool function

  

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• Update DESCRIPTION

  

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• add...argument to linear_pool

  

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• Update DESCRIPTION

  

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• Update test-linear_pool.R

  

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• update linear_pool documentation

  

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• Update DESCRIPTION

  

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Commits on Jul 26, 2023

• Update linear_pool roxygen documentation

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• add more detail to linear_pool roxygen documentation

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• remove redundant check of model_outputs

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• fix inconsistent indentation

  

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• Fix failing unit tests by installing dependencies

  

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Commits on Jul 27, 2023

• change check for correct class

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• update linear_pool documentation

  

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• refactor duplicated validations to validate_ensemble_inputs

  

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• move duplicated tests to validate_ensemble_inputs tests

  

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Commits on Jul 28, 2023

• add distfromq to package imports

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• refactor linear_pool different output type calculations

  

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Commits on Jul 31, 2023

• add test for correct calculation of quantiles

  

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Commits on Aug 1, 2023

• tidy linear_pool code for ensembling by output type

  

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• minimal fixes for linear_pool function updates

  

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Commits on Aug 4, 2023

• remove option for sample output type from linear_pool

  

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• improve code efficiency

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• make validate_ensemble_inputs an internal function

  

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• fix code formatting

  

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• Merge branch 'linear_pool-method' of https://github.com/Infectious-Disease-Modeling-Hubs/hubEnsembles into linear_pool-method

  

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• fix model_outputs class type

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• add linear_pool example based on unit test

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• make validate_ensemble_inputs internal function

  

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• fix linear_pool quantile test

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• fix task_id_cols check in validate_ensemble_inputs

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• Update package documentation

  

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• add explanation of linear_pool test

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• restructure first linear_pool test

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• remove unnecessary weights_col_name assignment

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• remove duplicate linear_pool_quantile checks

  

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• fix inconsistent indentation

  

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• drop unique_output_types from validate_ensemble_inputs returns

  

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• update documentation

  

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• fix distfromq function ref in documentation

  

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• Add package name to call to mutate

  

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Commits on Aug 7, 2023

• replace tidyverse install with component pkgs

  

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Commits on Aug 9, 2023

• remove devtools install from R-CMD-check.yaml

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• Use remotes for package install in R-CMD-check.yaml

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Commits on Aug 14, 2023

• add validate_output_type_ids function

  

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• update validate_output_type_ids documentation

  

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• add output_type_id check to validate_ensemble_inputs

  

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Commits on Aug 16, 2023

• Update R/linear_pool.R

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• Update R/linear_pool.R, pass ellipses arguments to linear_pool_quantile

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• Update R/linear_pool.R, add n_samples as argument to linear_pool

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• Update R/linear_pool.R, add n_samples as argument to linear_pool

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• Update R/linear_pool.R

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• Update R/linear_pool_quantile.R, pass ... arguments to distfromq::make_q_fn

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• add unit tests related to passing ellipses to distfromq::make_q_fn and validate_output_type_ids

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• remove unintentional figure in man/

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