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AMORPH 1.1.0-rc.2
Pre-releaseThe graphical interface shows the estimate of a run while the sampler
works, reports several seeds of one sample together and draws their
figures for LaTeX. The sampler and its results are those of 1.0.2.
Pre-releases (v1.1.0-rc.1, ...) come before the release, on GitHub only.
Added
-
«Прогоны» shows the estimate of the run while the sampler works: the
amorphous fraction with its 50% and 90% intervals from all the saves so
far with their posterior weights, how it moved over the saves, the
effective sample size, log(Z) and whether the estimate has settled; and
the background, the amorphous halo, the crystalline peaks and the model,
each a layer that can be hidden, for the posterior mean so far, the best
sample or the last saved one, with their levels among those of the
sampler. It used to show only the last saved sample, which once the
levels are built is usually from a low level and fits the data worse
than the posterior. -
«Сравнение»: the options file and the saves of each run, its effective
sample size, log(Z) against the best run of the same data and settings,
and its checks; a run 5 nats or more below the best did not converge
and is unticked. The ticked runs make a joint report (the fraction of
all the seeds together, the spread of their medians, warnings, a line
for a paper) and a figure, in the style ofdoc/figures/xrd_fit.texor
with two panels (doc/figures/xrd_seeds.tex), exported as the tables of
PGFPlots, a folder for LaTeX, PDF and SVG built with the LaTeX
installed, or PNG. «Добавить папку…» adds every archive of a folder. -
«Данные для PGFPlots…» on «Результаты» writes the tables of
export_pgf.pyfor the run. -
doc/figures/xrd_fit.texalso builds SVG:latexanddvisvgm. -
src/amorph_seeds.pypools the seeds of a sample;
export_pgf.write_tableswrites the tables from curves in memory;
src/amorph_tex.pywrites the folders of the figures and builds them. -
«Открыть прогоны…» on «Прогоны» (or a folder chosen on «Сравнение», or
folders dropped on the window) opens runs done earlier or on another
computer from their folders, many at a time: each on «Прогоны» with its
output and its estimate rebuilt from its saves, on «Результаты» and on
«Сравнение». A run without an up-to-date archive is post-processed. -
A splash screen shows as soon as the GUI starts, with the step under way:
the first start of a newly unpacked package can take a minute while the
system checks its files, and without a window the program was started
again and again. The README says so too.
Fixed
- The axes of the plots of the GUI no longer scale numbers with an SI
prefix: the histogram of the fraction read 200-800 "(x0.001)". - The layout of rc.1: an empty table of «Сравнение» squeezed «Архив» and
«Настройки» to a few letters, and its hint was cut off; the table of
«Прогоны» scrolled sideways; the empty plot of the fraction ran from
-0.4 to 0.4.
Build and CI
- A tag v-rc. (or -beta., -alpha.) makes a GitHub
pre-release of the version, with the notes of the version.