Test data: openvax-v2

Shared test reads for the OpenVax libraries (Isovar, Topiary, Varcode, Vaxrank), chosen once from public osteosarc.com data (CC0-1.0). See test data, #71 and #88.

• 993 members from 40 BAMs: 98,286 records. The members are openvax-v1's, and the libraries' 429 hold the same records.
• No mates with no position: none of the libraries' reads need them, and leaving them out means rebuilding never reads a BAM's unplaced reads.
• Split alignments: the reads it keeps bring the other records their SA tags name (14 records), except in pileups.
• Every variant on the site: all 187, plus other alleles the libraries test.
• Fusions and SVs: reads joining the breakends of all 7 RNA fusions and 8 of 14 DNA SVs. SVs say which side of each breakend they keep, and DLG5's deletion is at the junction esvee resolved, with its 24-base insertion.

Use it with osteosarc 0.14.4 or later: osteosarc test-data list openvax-v2. osteosarc downloads this archive and checks it against the checksums it ships:

• archive sha256 97ff69b266b93b113971d4e068ca87179c4fabf0a1bf24652a63d0a640255c28
• manifest sha256 b42dbce529cb5724153f035fca3783a41e673b31610a30851b2ef96d4ba43734