Skip to content

osteosarc 0.14.2

Choose a tag to compare

View all tags
@iskandr iskandr released this 28 Sep 03:10
· 14 commits to main since this release
v0.14.2
ecebb99
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

A tidier command line, and one place that decides where the OpenVax libraries' shared cache is.

  • Shared cache. osteosarc finds its cache with datacache.get_cache_root("openvax", "OSTEOSARC_CACHE", "OPENVAX_DATA_CACHE"), the same place every OpenVax library can use, so shared test data is downloaded once. Needs datacache 1.12.0.
  • Genome build. A Region's assembly can be None, meaning the BAM's own genome build, and osteosarc reads FILE REGION uses it when --assembly is left out.
  • osteosarc test-data on its own shows its help.
  • Tables mark cut cells with "…", keep rule lines under their columns and within the terminal, and leave out empty or (when too narrow) optional columns.
  • Wrapping. Notes and timeline entries wrap to the terminal without splitting words.
  • osteosarc downloads gives each file's whole path, and no longer lists snapshots' metadata.

Additive: nothing is removed or renamed.

Assets 5
Loading