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nf-modules_v0.1.0

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@jolespin jolespin released this 01 Sep 19:13
· 130 commits to main since this release
  • Initial release of nf-modules package
  • list command to display available modules in the repository
  • fetch command to download modules from GitHub repository
  • Support for multiple output formats in list command:
    • list-name: Simple module names
    • list-version: Module names with tool and module versions
    • yaml: YAML format for environment management
  • Tag/branch selection with -t/--tag option for fetch command
  • Module filtering with --filter option for list command
  • Initial module support for bioinformatics tools:
    • barrnap - Bacterial ribosomal RNA prediction
    • flye - De novo assembler for long-read sequencing
    • pyrodigal - Fast gene prediction for prokaryotes
    • spades - Genome assembler for bacterial genomes
    • trnascanse - tRNA gene detection
  • Command-line interface with argparse
  • pip installable package with entry points