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y_transform takes one entry per dependent variable as a list, like constraints. Summary.txt names the transform.
Bugs
With y_transform, data plots showed rows excluded by constraints, each excluded level with its own marker, and ignored x_order and rename. Statistics were unaffected; plots made with y_transform and any of these options must be regenerated.
An x_order naming only some levels dropped the others from the analysis without a word, or failed with an R error under a constraint. Unnamed levels now follow the named ones. Results from such runs must be recomputed.