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ukbrapR v0.3.4

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@lcpilling lcpilling released this 09 Apr 14:16
· 70 commits to main since this release
v0.3.4
348dc0e
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Learn about vigilant mode.

New features

  • make_dragen_bed() now uses the BGEN files released in April 2025 (in prior versions used the pVCFs).
    • Means when extract_variants() or create_pgs() are called with option source="dragen" this is the default.
    • If your project does not have the new BGEN files available you can use ukbrapR:::make_dragen_bed_from_pvcfs() to extract from the pVCFs (slow).

Changes

  • Updated internal schema to include new/updated fields.
  • Added "filename" option to fields_to_phenos() so that phenotype names can be written straight to a file ready for table-exporter.
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