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Add read count (RC) attribute to GFA [feature request] #42

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sjackman opened this issue Feb 28, 2018 · 2 comments
Open

Add read count (RC) attribute to GFA [feature request] #42

sjackman opened this issue Feb 28, 2018 · 2 comments

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@sjackman
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Bandage will draw the thickness of the unitig segments according to their depth when the segments include the read count (RC:i) attribute.
See https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md#optional-fields-2

@sjackman
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Somewhat related, is the fourth field of the x records the number of read susbtrings used to build the unitig segment? Does Miniasm output somewhere the total number of reads involved in a unitig, not just those reads used to compose the final sequence?

x       utg003137l      21310   5

@sjackman
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sjackman commented Oct 5, 2018

Unicycler outputs the scaled depth of coverage in the dp:f: tag, for example dp:f:1.50 is 50% more depth than a typical sequence.

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