v1.0.15

• updates Julia package dependencies
• adds information about the best complementary region for each ligation event into the ligation points table.

To update tables, just rerun the analysis on an existing config / results folder.

v1.0.14

Adds export of interaction counts for each replicate + combined interaction counts table.
Updates to julia 1.11.6 and updates dependencies.

v1.0.13

• adds tabular output of ligation points.
• updates Julia and package dependencies to latest versions

v1.0.12

Adds a user's manual to the graphical interface and updates to Julia 1.11.0

v1.0.11

• fixes an edge case error when plotting interactions close to the start or end of a chromosome sequence
• fixes missing check for reference sequence identity when classifying chimeras
• adds a new distance cut-off for self-chimeras

v1.0.10

• update to Julia 1.10.4
• update dependencies
• fix visualization of self-chimeras

v1.0.9

Update to Julia 1.10.1, which fixes hanging when shutting down the visualization.

v1.0.8

Adds an option for filtering alignments by mapping quality to remove hits to repeats with a mapping quality of 0
Gracefully shutting down the visualization is still broken, hit Ctrl-C two times to shut it down.

v1.0.7

Update for compatibility with Julia 1.10.0. Gracefully shutting down seems to be a problem for the visualization. Use Ctrl-C two times, if necessary, or use ChimericFragments 1.06 with Julia 1.9.x.

v1.0.6

• fix clicking on edges with no ligation points
• increase example dataset size
• switch back to pearson correlation between replicates
• download ligation point and basepairing plot data instead of copy to clipboard