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d-laub
released this
14 Jun 02:32
Feat
dataset : fold haplotypes into ploidy-1 union in variant decode (#222 )
dataset : reject haplotypes/annotated output under unphased_union (#222 )
dataset : report ploidy=1 and fold n_variants under unphased_union (#222 )
dataset : add unphased_union flag on Haps + with_settings (#222 )
Fix
dataset : keep n_variants int32 under unphased_union fold (#222 )
Refactor
variants : drop retired order-dependent germline-CCF inference (#222 )
Perf
threads : tolerate malformed GVL_NUM_THREADS at import (#221 )
variant-windows : single fused fetch for both-window decode (#221 )
flanks : fuse 3 ref-window fetches into 1 via flank slicing (#221 )
reference : dispatch get_reference kernel serial/parallel (#221 )
reference : dispatch fetch kernel serial/parallel by per-thread bytes (#221 )
threads : cap numba workers to cgroup cores + add dispatch predicate (#221 )
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