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v0.42.0

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@d-laub d-laub released this 03 Aug 15:15
· 97 commits to main since this release

Feat

  • write: preflight the svar2 range cache and accept max_mem
  • concat: verify variants.arrow fingerprint at open
  • concat: tracks, annot tracks, and svar/svar2 backends
  • concat: gvl.concat entry point for PGEN/VCF-backed datasets
  • concat: buffered streaming IO primitives
  • concat: preconditions and variants.arrow fingerprint
  • concat: provenance map and run coalescing for dataset merge

Fix

  • write: bound svar2 genotype-writing memory with max_mem
  • concat: scope duplicate-coordinate guard to axis="regions"
  • concat: close tie-order/schema gaps and drop full-array copies
  • concat: verify annot-track data agrees before copying on sample axis
  • concat: resolve has_dosages/fingerprint from the real store, enforce one variant source