Update differentiated files to latest tapenade version

[eirikurj]

Purpose

This PR updates the AD'd files to the latest Tapenade version. The ADFirstAidKit files are also updated. Current pinned Tapenade version (Jul 2021) creates nonstandard type declarations, so postprocessing steps are added.

Expected time until merged

Few days

Type of change

• Bugfix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (non-backwards-compatible fix or feature)
• Code style update (formatting, renaming)
• Refactoring (no functional changes, no API changes)
• Documentation update
• Maintenance update
• Other (please describe)

Testing

Checklist

• I have run flake8 and black to make sure the Python code adheres to PEP-8 and is consistently formatted
• I have formatted the Fortran code with fprettify or C/C++ code with clang-format as applicable
• I have run unit and regression tests which pass locally with my changes
• I have added new tests that prove my fix is effective or that my feature works
• I have added necessary documentation

[codecov]

Codecov Report

Merging #89 (77bb50b) into main (62e5fac) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##             main      #89   +/-   ##
=======================================
  Coverage   73.31%   73.31%           
=======================================
  Files           6        6           
  Lines         757      757           
=======================================
  Hits          555      555           
  Misses        202      202           

📣 We’re building smart automated test selection to slash your CI/CD build times. Learn more

[sseraj]

Can you update the Tapenade make process so that running make -f Makefile_tapenade by default runs ad_forward and ad_reverse? It would also be nice to clean up the temp_forward and temp_reverse directories.

[eirikurj]

@sseraj updated the Makefile rules a bit as you suggested. I also made minor adjustments to autoedit scripts to check input and reduce code duplication.

[sseraj]

Thanks for cleaning up the build process!