-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
DO NOT MERGE: Cumulative configurations etc (reuse as documentation only) #137
Conversation
and has_configuration slot
…n.yaml Needed because nmdc.yaml inherits from workflow_execution.yaml but not vice versa, so in order to use class on both, need to define on workflow_execution.yaml.
also make a better definition for Configuration and related slots
expand comments on Configuration and similar
…' into cumulative-configurations
With a temperature of 0: Analysis of Configuration Patterns in the NMDC SchemaThe NMDC schema presents several patterns for modeling configurations, leading to potential complexity and inconsistency. Here's a breakdown of the observed patterns: 1. Inline Configuration Slots:
2. Configuration Subclasses:
3. Calibration DataObjects:
4. Protocol Modeling:
5. DataObjects for Software-Specific Settings:
Suggestions for Simplification and Alignment with OBI1. Standardize on Configuration Subclasses:
2. Leverage OBI or IAO for Configuration Modeling:
3. Flatten the Hierarchy:
4. Reconsider Calibration Modeling:
5. Clarify Protocol Usage:
6. Evaluate DataObjects for Software Settings:
Implementation Considerations
ConclusionBy adopting a consistent and standardized approach to configuration modeling, the NMDC schema can be simplified and aligned with established ontologies like OBI. This will improve data interoperability, facilitate data integration, and enhance the overall usability of the schema. |
temperature = 2 Analysis of Configuration Patterns in the NMDC SchemaThe NMDC schema presents a multifaceted approach to modeling configurations, leading to potential complexity and challenges in data integration and interpretation. Let's delve into the different patterns observed: 1. Inline Configuration Slots:
2. Configuration Subclasses:
3. Data Objects for Calibration:
4. Protocol Modeling:
Suggestions for Simplification and Alignment with OBI: 1. Utilize OBI and IAO Classes:
2. Introduce a Dedicated Configuration Class:
3. Standardize Calibration Modeling:
4. Link Processes to Configurations:
5. Refactor Inline Configuration Slots:
6. Improve Protocol Integration:
Benefits of Simplifying Configuration Modeling:
Considerations and Tradeoffs:
Overall, adopting a standardized approach using OBI and IAO principles can significantly enhance configuration modeling in the NMDC schema. While some complexities exist, the benefits of improved clarity, data integration, and reusability outweigh the challenges. Careful planning and implementation will be key to ensuring a successful transition. |
Added some questions about instruments to the prompt: Analysis of Configuration Patterns in the NMDC SchemaThe NMDC schema presents several patterns for modeling configurations, each with its own advantages and disadvantages: 1. Inline Configuration Slots:
2. Configuration Subclasses:
3. Calibration DataObjects:
4. Protocol Modeling:
5. Instrument Specification:
Additional Patterns:
Suggestions for Simplification and Alignment with OBI
ConclusionThe NMDC schema offers various configuration modeling approaches, each with its own strengths and weaknesses. By analyzing these patterns and considering the suggestions for simplification and alignment with OBI, the schema can be further refined to improve data consistency, reusability, and interoperability. |
This merger is intended as input into an LLM analysis of the various configuration, calibration, etc mechanisms in NMDC's bleeding edge berkeley-schema-fy24.
Use code like