Unusual inference arising from is-a overloading from ORDO

[cmungall]

E.g.

FIX: remove assertion 46,XY complete gonadal dysgenesis is a syndromic lymphedema

[cmungall]

FIX: syndrome associated with X should have X as a feature rather than subtype of X

[nicolevasilevsky]

related to #834

[nicolevasilevsky]

to do:

• syndrome associated with X should have X as a feature rather than subtype of X

[nicolevasilevsky]

Action items:

• For the classes below, if the parent class is the "with", it should be excluded (see instructions here)
• If there is not an additional parent, add the superclass 'syndromic disease', source: your https://orcid.org/0000-0002-6601-2165
• add seeAlso to this ticket

each curator should check and box and open a new ticket for each disease branch that they work on

These terms below are candidates for obsoletion

• 'syndrome associated with dilated cardiomyopathy' - @nicolevasilevsky exclude superclass from children of 'syndrome associated with dilated cardiomyopathy' #3499
• 'syndrome or malformation associated with head and neck malformations' review children of syndrome or malformation associated with head and neck malformations #3502
• 'familial syndrome associated with hypertrophic cardiomyopathy'
• 'Pierre Robin syndrome associated with a chromosomal anomaly'
• 'Pierre Robin syndrome associated with bone disease'
• 'Pierre Robin syndrome associated with branchial archs anomalies'
• 'Pierre Robin syndrome associated with collagen disease'
• 'hemophagocytic syndrome associated with an infection'
• 'autosomal ichthyosis syndrome with other associated signs'
• 'ectodermal malformation syndrome associated with ocular features'
• 'ectopic hormone secretion syndrome associated with neoplasia'

[nicolevasilevsky]

• we want to obsolete these grouping classes
• first check the usage of these terms in Monarch
• do not need to add the phenotype annotations

[nicolevasilevsky]

'myalgia-eosinophilia syndrome associated with tryptophan' has 10 phenotypes in Monarch, do not obsolete
https://monarchinitiative.org/disease/MONDO:0016822#phenotype