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Check is-a relationships that are supported only by a single source #704

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cmungall opened this issue May 17, 2019 · 9 comments
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Check is-a relationships that are supported only by a single source #704

cmungall opened this issue May 17, 2019 · 9 comments
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@nicolevasilevsky @matentzn
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blocked Something needs to be done before work can proceed duplicate low priority ordo-project Ordo-xref

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@cmungall
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I'm attaching a report of is-as that are inly supported by a single source

we may want to break these down by source and validate them, e.g. ordo

UNIQUE_ISA.tsv.gz
@nicolevasilevsky
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I'm not sure I understand what the action item is here, could you please provide some more guidelines?

@nicolevasilevsky nicolevasilevsky mentioned this issue Feb 17, 2021
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@nicolevasilevsky
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I added the spreadsheet to google drive

@nicolevasilevsky
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This spreadsheet is out of date. @matentzn can you create us a current spreadsheet?

@nicolevasilevsky nicolevasilevsky mentioned this issue Aug 10, 2021
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@matentzn
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Why is this ticket important?

@nicolevasilevsky
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Note to self- this is the SPARQL query:
src/sparql/reports/ORDO-is-a.sparql

instructions to run the report are here:
https://mondo.readthedocs.io/en/latest/editors-guide/generate-report/

@nicolevasilevsky
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Here is the updated report: https://docs.google.com/spreadsheets/d/1347lkwDoHodqKIeeYYAnRiraCIYqbSeNo6yAuM0faDk/edit#gid=2139783465

@nicolevasilevsky
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this is lower priority, dependent on #324 and #667

@nicolevasilevsky nicolevasilevsky added blocked Something needs to be done before work can proceed low priority labels Aug 20, 2021
nicolevasilevsky added a commit that referenced this issue Oct 12, 2021
@nicolevasilevsky
exclude superclasses
a0adf37 
address #704
@nicolevasilevsky nicolevasilevsky mentioned this issue Oct 12, 2021
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@nicolevasilevsky
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As part of this process, we'll obsolete Orphanet grouping classes:

Mondo ID Label
ID
MONDO:0019704 primary bone dysplasia with decreased bone density
MONDO:0019705 primary bone dysplasia with defective bone mineralization
MONDO:0019708 primary bone dysplasia with disorganized development of skeletal components
MONDO:0019703 primary bone dysplasia with increased bone density
MONDO:0018232 primary bone dysplasia with micromelia
MONDO:0019700 primary bone dysplasia with multiple joint dislocations
MONDO:0018231 primary bone dysplasia with progressive ossification of skin, skeletal muscle, fascia, tendons and ligaments

@nicolevasilevsky nicolevasilevsky mentioned this issue Oct 15, 2021
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@nicolevasilevsky nicolevasilevsky mentioned this issue Oct 22, 2021
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@nicolevasilevsky
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I combined this with ticket #3886. Closing this one.

nicolevasilevsky added a commit that referenced this issue Feb 18, 2022
@nicolevasilevsky
obsolete classes
8c9ba2c 
from [spreadsheet](https://docs.google.com/spreadsheets/d/1jIdUr9LFgb0fU2RWiUgItwbWUr0oY2Knz0G2FK6a2aU/edit#gid=654469874)

address #704
address #3880
address #3886
@nicolevasilevsky nicolevasilevsky mentioned this issue Feb 18, 2022
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