The tools are used to obtain data from beamline databroker servers and perform initial data analysis (e.g., calculation of the FWHM of the undulator harmonics).
Install miniconda from https://conda.io/miniconda.html. Then create the environment for databroker:
conda create --name databroker python=3.6 numpy scipy matplotlib
activate databroker
pip install -r https://raw.githubusercontent.com/mrakitin/databroker-extractor/master/requirements.txt
pip install git+https://github.com/mrakitin/databroker-extractorAccess DataBroker data from outside the gateway:
- Prepare the SSH config file, e.g.:
$ cat ~/.ssh/config
Host chx-srv1
User mrakitin
Hostname xf11id-srv1
LocalForward 27011 localhost:27017
ProxyCommand ssh mrakitin@box64-3.nsls2.bnl.gov nc %h %p 2> /dev/null-
Create
/XF11ID/data/dir on a local machine and make a current user/group to own the dir. -
Datastore/filestore are configured automatically, e.g. for 5-ID (SRX) the forwarded port is 27005, for 11-ID (CHX) - 27011, for 12-ID (SMI) - 27012.
-
Make a tunnel to go through a firewall on Linux:
ssh -fN -o ExitOnForwardFailure=yes chx-srv1 2>/dev/null && sshfs mrakitin@chx-srv1:/XF11ID/data /XF11ID/data/-
Make a tunnel to go through a firewall on Windows (with installed PuTTY+Plink) - execute the following batch files:
-
Use earlier defined conda environment or use one from the databroker tutorial - https://github.com/NSLS-II/broker-tutorial.
-
Run the script to collect data:
SMI:
$ databroker-extractor -b smi -s 400 420 440 460 480 -e # saves data and plots for the provided scans$ databroker-extractor -b smi -p 400 420 440 460 480 -e # plots data for the provided scans
CHX:
$ databroker-extractor -b chx -p 19008 19010 19021 19023 -e
SRX:
$ databroker-extractor -b srx -p 029c0d3a 705980d9 82337021 a0d35aba 54032db3 7355ac61 96957282 83d5c99d c727d916 -e