Fix tests and improve documentation #2
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NIX no longer uses Value class for managing the value of metadata properties. Values are added and retrieved directly. Empty property values are now supported, but require a type to be specified. The IO uses string as a default. NIX returns collections of property values as tuples. The IO returns lists explicitly for consistency with older behaviour.
When reading the metadata from NIX objects, add the inherited properties to the object as well, allowing users to link the primary metadata of the object to extended metadata properties that are added later.
[MRG] Implementation of the "raw" Multi Channel System (MCS) IO
[nixio] New library version 1.5
…not caught by Travis or CircleCI? My env: conda list # packages in environment at /Users/andrew/anaconda/envs/neo: # alabaster 0.7.6 py27_0 http://repo.continuum.io/pkgs/free/osx-64/alabaster-0.7.6-py27_0.tar.bz2 allensdk 0.12.0 <pip> babel 2.1.1 py27_0 http://repo.continuum.io/pkgs/free/osx-64/babel-2.1.1-py27_0.tar.bz2 certifi 2016.2.28 py27_0 defaults chardet 3.0.4 <pip> coverage 3.7.1 py27_0 http://repo.continuum.io/pkgs/free/osx-64/coverage-3.7.1-py27_0.tar.bz2 cython 0.27 <pip> dateutil 2.1 py27_2 <unknown> docutils 0.12 py27_0 http://repo.continuum.io/pkgs/free/osx-64/docutils-0.12-py27_0.tar.bz2 enum34 1.1.6 <pip> freetype 2.4.10 1 <unknown> funcsigs 1.0.2 py27_0 defaults future 0.16.0 <pip> h5py 2.5.0 np110py27_4 http://repo.continuum.io/pkgs/free/osx-64/h5py-2.5.0-np110py27_4.tar.bz2 hdf5 1.8.15.1 2 http://repo.continuum.io/pkgs/free/osx-64/hdf5-1.8.15.1-2.tar.bz2 idna 2.7 <pip> igor 0.2 <pip> ipython 2.3.0 py27_0 http://repo.continuum.io/pkgs/free/osx-64/ipython-2.3.0-py27_0.tar.bz2 jinja2 2.8 py27_0 http://repo.continuum.io/pkgs/free/osx-64/jinja2-2.8-py27_0.tar.bz2 klusta 3.0.16 <pip> libpng 1.5.13 1 <unknown> markupsafe 0.23 py27_0 http://repo.continuum.io/pkgs/free/osx-64/markupsafe-0.23-py27_0.tar.bz2 matplotlib 1.4.2 np19py27_0 http://repo.continuum.io/pkgs/free/osx-64/matplotlib-1.4.2-np19py27_0.tar.bz2 mkl 11.3.1 0 http://repo.continuum.io/pkgs/free/osx-64/mkl-11.3.1-0.tar.bz2 mock 2.0.0 py27_0 defaults neo (/Users/andrew/dev/analysis/neo) 0.7.0.dev0 <pip> neurom 1.4.8 <pip> nixio 1.4.2 <pip> nose 1.3.4 py27_0 http://repo.continuum.io/pkgs/free/osx-64/nose-1.3.4-py27_0.tar.bz2 nsdf 0.1 <pip> numexpr 2.3.1 np19py27_0 http://repo.continuum.io/pkgs/free/osx-64/numexpr-2.3.1-np19py27_0.tar.bz2 numpy 1.10.4 py27_0 http://repo.continuum.io/pkgs/free/osx-64/numpy-1.10.4-py27_0.tar.bz2 nwb (/Users/andrew/packages/nwb_api-python) 1.0.4b0 <pip> openssl 1.0.2l 0 defaults pandas 0.18.1 <pip> pbr 1.10.0 py27_0 defaults pip 9.0.1 py27_1 defaults pkginfo 1.4.2 <pip> pygments 2.0.2 py27_0 http://repo.continuum.io/pkgs/free/osx-64/pygments-2.0.2-py27_0.tar.bz2 pylru 1.1.0 <pip> pynrrd 0.2.1 <pip> pyparsing 2.0.1 py27_0 <unknown> pytables 3.1.1 np19py27_0 http://repo.continuum.io/pkgs/free/osx-64/pytables-3.1.1-np19py27_0.tar.bz2 python 2.7.13 0 defaults python-dateutil 1.5 <pip> python.app 1.2 py27_3 http://repo.continuum.io/pkgs/free/osx-64/python.app-1.2-py27_3.tar.bz2 pytz 2015.7 py27_0 http://repo.continuum.io/pkgs/free/osx-64/pytz-2015.7-py27_0.tar.bz2 pyyaml 3.12 <pip> quantities (/Users/andrew/anaconda/envs/neo/lib/python2.7/site-packages) 0.12.1 <pip> readline 6.2 2 <unknown> requests 2.19.1 <pip> requests-toolbelt 0.8.0 <pip> scipy 0.14.0 np19py27_0 http://repo.continuum.io/pkgs/free/osx-64/scipy-0.14.0-np19py27_0.tar.bz2 setuptools 36.4.0 py27_0 defaults six 1.10.0 py27_0 http://repo.continuum.io/pkgs/free/osx-64/six-1.10.0-py27_0.tar.bz2 snowballstemmer 1.2.0 py27_0 http://repo.continuum.io/pkgs/free/osx-64/snowballstemmer-1.2.0-py27_0.tar.bz2 sphinx 1.3.1 py27_0 http://repo.continuum.io/pkgs/free/osx-64/sphinx-1.3.1-py27_0.tar.bz2 sphinx-rtd-theme 0.1.7 <pip> sphinx_rtd_theme 0.1.7 py27_0 http://repo.continuum.io/pkgs/free/osx-64/sphinx_rtd_theme-0.1.7-py27_0.tar.bz2 sqlite 3.13.0 0 defaults tables 3.1.1 <pip> tk 8.5.18 0 http://repo.continuum.io/pkgs/free/osx-64/tk-8.5.18-0.tar.bz2 tqdm 4.19.5 <pip> twine 1.11.0 <pip> urllib3 1.23 <pip> wheel 0.29.0 py27_0 http://repo.continuum.io/pkgs/free/osx-64/wheel-0.29.0-py27_0.tar.bz2 zlib 1.2.11 0 defaults
…explicitly support passing scalar quantity as Epoch duration.
[ci skip]
Fix some bugs which I see on my laptop, although apparently they are not caught by Travis or CircleCI?
Fix Python3 issue in BlackrockIO
…hon-neo into bjoern_arrayanno
[skip ci]
Fix warnings before 0.7
Doc for axonio read_protocol
Intanrawio : both RHD and RHS
…hon-neo into bjoern_arrayanno
Add `Event.to_epoch` method
Avoid hard coding of warning settings Travis testing Travis testing Travis testing Test travis Travis testing Travis test Travis test Travis test Travis test Travis test Clean up travis testing
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This PR includes the latest changes from neuralensemble/python-neo master and fixes the currently failing test in NeuralEnsemble#472.