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@neranjan007 neranjan007 released this 24 Sep 03:02
· 29 commits to main since this release
1.2.0
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Learn about vigilant mode.

Added new features

  • rMLST
  • ANI
  • kraken and bracken (still checking raw and trimmed reads)
  • quast
  • emmtyping tool accepts trimmed reads
  • screen for estimation of coverage (a test)
  • fastqc task also checks the coverage using fastqc-scan
  • trimomatic used updated values

software versions

  • fastqc:0.11.9_plus
  • trimmomatic:0.39
  • kraken-bracken:k2.1.2-b2.8
  • emmtypingtool:0.0.1
  • spades:3.15.5
  • emmtyper:0.2.0--py_0
  • mummer:4.0.0-ANI-gas
  • quast:5.0.2
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