Skip to content

v.1.3.0

Choose a tag to compare

View all tags
@neranjan007 neranjan007 released this 22 Nov 00:08
· 21 commits to main since this release
1.3.0
5f9c7c4
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

Added kraken database as workflow input value
Added ANI docker with complete strep species

features

  • rMLST
  • ANI
  • quast
  • emmtyping tool accepts trimmed reads
  • fastqc task with coverage using fastqc-scan
  • kraken contamination check

software versions

  • fastqc:0.11.9_plus
  • trimmomatic:0.39
  • kraken-bracken:k2.1.2-b2.8
  • emmtypingtool:0.0.1
  • spades:3.15.5
  • emmtyper:0.2.0--py_0
  • mummer:4.0.0-ANI-gbs (new)
  • quast:5.0.2
Assets 2
Loading