what do you think about bioconductor?

[jovo]

it is somewhat related: https://www.bioconductor.org/
perhaps we should cite put our contribution in context of that.
what do you think?

[gkiar]

I think with the reframing of science in the cloud as a capability and proposed model for replication, but not yet a user facing service provided by us, the connection to bioconductor is weaker. If I understand correctly, it is a software package which amalgamates genomics computation tools into a single and consistent framework for R. That is super wonderful, but no longer parallel to what we're providing so I'm comfortable leaving out. Thoughts?

[jovo]

agreed, though we are low on citations, so i thought it might be good to
cite some other work,
including bioconductor, mybinder, science container stuff, etc.

when submitting a paper, you cite work that you think reviewers might be
pissed that you did not cite.
in other words, the choice of what to cite for a submission is based on
what can increase the changes of getting in.

also, the distinction is very clear to us, not as clear perhaps to other
people.
so, in the discussion, it might be worth explicitly differentiating between
our efforts and other ones.

all just ideas...

On Tue, Sep 13, 2016 at 3:37 PM, Greg Kiar notifications@github.com wrote:

I think with the reframing of science in the cloud as a capability and
proposed model for replication, but not yet a user facing service provided
by us, the connection to bioconductor is weaker. If I understand correctly,
it is a software package which amalgamates genomics computation tools into
a single and consistent framework for R. That is super wonderful, but no
longer parallel to what we're providing so I'm comfortable leaving out.
Thoughts?

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[gkiar]

Great point. I'm still learning this stuff! :)

I also added citations for the known scientific container manuscripts.