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Version 19.07.0

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@pditommaso pditommaso released this 27 Jul 19:56
· 2717 commits to master since this release
bda0b55
  • Add support for K8s annotations #1240 [8eeb7f9]
  • Add support for Moab resource manager #1224 [3ba51a1]
  • Add Pbs Pro execution documentation [1d39ab3]
  • Add code of conduct document
  • Fix missing LFS executor register invocation #1234 [b1b7ab1]
  • Fix "invalid pod status" when running scrips with the kubernetes executor #1242 [11caac6]
  • Revert Fix Environment activation fails with recent versions of Conda #1195 [98c0d1f]

(from 19.07.0-edge)

  • Fix Remote input file download slowdown submission rate #1206 [b710e21]
  • Fix serial publishDir uploads #856 [1477485]
  • Fix Trace file option is not honoured #1217
  • Fix Custom lib path is not added to the classpath #1213
  • Fix Discovery executor tracing error [3e26c14]
  • Add megabyte unit to Slurm memory requirement #1216 [efabdd2]
  • Add support for GCP dynamic machine type #1198 [5c2c766]
  • Add setCredentialsProvider for submodules #1205 [e246041]
  • Improve google pipelines docs [aed407e]
  • Improve FileTransfer await termination log #1206 [cb968da]
  • Allow trace logging for com.upplication.s3fs package [d71b94e]
  • Upgrade s3fs lib to version 1.0.6 #856

(from 19.06.0-edge)

  • Fix Nextflow indefinitely waiting for killed jobs #981
  • Fix Suppress Unknown hashing type logging message #1178 [a005b1b]
  • Fix a typo in AWS docs (#1171)
  • Fix Invalid response cause Google pipelines exec to crash #1163
  • Fix kuberun doesn't delete config maps #1165
  • Fix Disable ansi logging when using kuberun command #1161
  • Fix comparable test with groovy 2.5.8 [3d1c083]
  • Fix Unexpected config selector warning #1167 [52e70e3]
  • Fix Kuberun should honour -bg (background) option #1159 [4b160b7]
  • Add S3 download retry (#1164)
  • Upgrade BitBucket provider with API 2.0 [feeddcd]
  • Print ansi summary for exec > 60 secs [53c9427]
  • Remove deprecated countText operator #983
  • Demote warmup into to debug level [c7d0833]
  • Demote barrier logging to trace level [5b7234a]

(from 19.05.0-edge)

  • Add Aws Batch maxParallelTransfers config #1107 [26d3755]
  • Add NXF_ANSI_SUMMARY var to disable log summary [d4b9cc4]
  • Add support for AWS user volumes and jobRoleArn [651eead]
  • Add Support for LSF per task resource reserve mode #1071
  • Fix Env variable with blanks is not resolved correctly in containers #1146
  • Fix method isDynamic visibility [f241781]
  • Fix WebLogObserver data leak on completion #1010
  • Fix unit test execution [622d97d]
  • Fix Quiet cli option is not honoured [e656e4b]
  • Fix Log messages don't show in the console #1129 [95f4dd7]
  • Fix nextflow build timestamp json rendering [af6584c]
  • Fix Launcher should return non-zero exit when fail to step env #1126
  • Update get started docs [68f5336]
  • Update aws sdk to version 1.11.542
  • Update created label in timestamp [e8945e8]
  • Update readme IDE version
  • Refactor AWS cli path option [ad9af0d]
  • Improve Dsl-2 error reporting [4e2621f]
  • Improve CI tests scripts [febeb53]
  • Improve docs for config profiles [8cf95a5]
  • Syntax enhancement aka DLS-2 #984 [651af95]
  • Print summary only the run takes > 3mins [cd45971]
  • Render last tag along with the process name #1144 [8cf8cc4]
  • Sync build scripts [a568921]
  • Provide scm credentials when fetching information about remote branches #1135 [808847b]
  • Code cleanup [2322fbc]