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Report insertions stripped during alignment #449

Merged
merged 6 commits into from May 23, 2020
Merged

Report insertions stripped during alignment #449

merged 6 commits into from May 23, 2020

Commits on Feb 27, 2020

  1. [align] make dedicated remove_reference_sequence function

    @jameshadfield
    jameshadfield committed Feb 27, 2020
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  2. [align] prototype reporting of insertions

    @jameshadfield
    jameshadfield committed Feb 27, 2020
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Commits on May 15, 2020

  1. merged master into indels branch, resolved conflicts

    @rneher
    rneher committed May 15, 2020
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  2. fixed call to strip_reference that now requires an alignment rather t… 

    …han a file name
    @rneher
    rneher committed May 15, 2020
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  3. remove reference removal from strip insertions

    @rneher
    rneher committed May 15, 2020
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  4. ajust doc string of strip_non_reference

    @rneher
    rneher committed May 15, 2020
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