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nf-core/fetchngs v1.10.0 - Manganese Monkey
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@ejseqera ejseqera released this 16 May 16:12
· 649 commits to master since this release
1.10.0
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Learn about vigilant mode.

[1.10.0] - 2023-05-16

Credits

Special thanks to the following for their contributions to the release:

Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.

Enhancements & fixes

  • #85 - Not able to fetch metadata for ERR ids associated with ArrayExpress
  • #104 - Add support back in for GEO IDs (removed in v1.7)
  • #129 - Pipeline is working with SRA run ids but failing with corresponding Biosample ids
  • #138 - Add support for downloading protected dbGAP data using a JWT file
  • #144 - Add support to download 10X Genomics data
  • PR #140 - Bumped modules version to allow for sratools download of sralite format files
  • PR #147 - Updated pipeline template to nf-core/tools 2.8
  • PR #148 - Fix default metadata fields for ENA API v2.0
  • PR #150 - Add infrastructure and CI for multi-cloud full-sized tests run via Nextflow Tower
  • PR #157 - Add public_aws_ecr.config to source mulled containers when using public.ecr.aws Docker Biocontainer registry

Software dependencies

Dependency Old version New version
synapseclient 2.6.0 2.7.1

NB: Dependency has been updated if both old and new version information is present.

NB: Dependency has been added if just the new version information is present.

NB: Dependency has been removed if new version information isn't present.

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