Upgrade to rseqc v3.0

[ewels]

As discussed in #81, it would be good to upgrade to version 3.0 of RSeQC - it should be a lot faster and will hopefully solve our problems with the gene body coverage task.

Website: http://rseqc.sourceforge.net/
PyPI package: https://pypi.org/project/RSeQC/

To do:

• Check that other packages in the environment are python 3 compatible
• Release RSeQC v3.0 on bioconda
• Update pipeline to use new commands / check that everything still works
• Update MultiQC modules as required to parse any output that's changed

[apeltzer]

bioconda/bioconda-recipes#13163 works on the bioconda release!

[apeltzer]

I just looked at the environment, but all other tools should be either python3 compatible or don't have any python dependencies at all.

[apeltzer]

Recipe bumped to 3.0.0 - will be available in 15minutes on bioconda 👍

[ewels]

Awesome, thanks @apeltzer!

[apeltzer]

Going to work on this now. Need to get back to more programming and development now 👍