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Nf core vc #7

Merged
merged 80 commits into from
May 8, 2019
Merged

Nf core vc #7

merged 80 commits into from
May 8, 2019

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maxulysse
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  • add Annotation
  • Better indentation
  • Add parallelized testing on Travis
  • Add parallelized building of Docker Images for annotation on CircleCI
  • Update docs

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!

@maxulysse
update README
bcffe9c
@maxulysse
update links
b0798b6
@maxulysse
add containers for annotation
568bade
@maxulysse
Merge remote-tracking branch 'upstream/dev' into nf-core-VC
c0c29de
@maxulysse
add circleci file
f223a1c
@maxulysse
update circleci file
42754c9
@maxulysse
fix path to Dockerfile
47d9cda
@maxulysse
improve tag
8037b84
@maxulysse
add docs
b17b8f0
@maxulysse
remove --sampleDir
63af51c
@maxulysse
add configuration for annotation
30697ac
@maxulysse
improve recipe to build docker images for annotation
6e15519
@maxulysse
fix typo
a91e8a5
@maxulysse
fix typo
e00dfee
@maxulysse
containers are tagged version.genomeversion
8e63377
@maxulysse
fix container definition for annotation
bece826
@maxulysse
add annotation
bc5566d
@maxulysse
add MultiQC
9e4fbb5
@maxulysse
fix duplicate in MultiQC output
fff1c71
@maxulysse
update tests
18a3b44
@maxulysse
better handling of the containers
3f0b20a
@maxulysse
fix circleci file
b23b2d0
@maxulysse
fix circleci file
09cbfa6
@maxulysse
fix circle ci
27e9bae
@maxulysse
add variables to project
8449204
@maxulysse
update tests
96aba77
@maxulysse
add 2h to timeout limit
3db49ab
@maxulysse
fix indentation
a83c838
@maxulysse
attempt to parrallelize
2670300
@maxulysse
better ENV
3544ab0
@maxulysse maxulysse merged commit 3c5f236 into nf-core:dev May 8, 2019
@maxulysse maxulysse deleted the nf-core-VC branch May 8, 2019 14:33
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@maxulysse