Benchmarking ngless
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
data
htseq-counts
mocat
ngless
sources
.gitignore
README.md
benchmark.png
download-data.py

README.md

NGLess Benchmarking

This repository includes code for benchmarking ngless.

Result

Reproducing

From scratch

  1. Download all data: run the script download-data.py. This will download from ENA into a directory data/ (this process can take a few hours and will result in ca. 50GiB of data).

Using the precomputed results

  1. Precomputed data is available in data/precomputed
  2. The script sources/plot-comparison.py generates the comparison plot