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2.0.6

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@crosenth crosenth released this 10 Jul 19:37
  • Replace c5d_2xlarge/c5d_9xlarge labels with single high_cpu label
  • Automatic CPU-based concurrency: executor.cpus defaults to all available processors; high_cpu processes cap at min(nproc, available)
  • Vectorize seqmap construction in dada2_dada.R for faster dereplicate step
  • New bin/create_manifest.py --batch argument (defaults to 1)
  • Add OCI labels to Dockerfile for GitHub Container Registry
  • Documentation: CPU behavior, --config override example

Full Changelog: 2.0.5...2.0.6

2.0.5

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@crosenth crosenth released this 12 Jun 16:36

What's Changed

  • Optional binned quality scores parameter for DADA2 error learning (GH #99)
  • Pin DADA2 to Bioconductor 1.40.0 stable commit
  • Add sha256sum regression checks to CI tests

Full Changelog: 2.0.4...2.0.5