Skip to content
View nilseling's full-sized avatar
44 followers · 2 following

Achievements

Achievement: YOLOAchievement: StarstruckAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: StarstruckAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Block or report nilseling

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
nilseling/README.md

My work focuses on single-cell, bioimage and spatial data analysis to understand immune-tumor interactions in various cancer types. I also build R/Bioconductor packages and workflows to standardize bioimage and spatial data analysis. You can see my main contributions on the BodenmillerGroup organisation.

GitHub statistics

Github stats

Ex-Package maintainer

Package Rank Build
cytomapper
imcRtools

Package contributor

Package Rank Build
cytoviewer
BASiCS
imcdatasets

Ex-Workflow maintainer

Workflow Build Website
IMCWorkflow https://bodenmillergroup.github.io/IMCWorkflow/
IMCDataAnalysis build https://github.com/BodenmillerGroup/IMCDataAnalysis

Analysis repositories

Repository Year
cytomapper_publication 2020
GammaDeltaTcells2018 2018
Spermatogenesis2018 2018
RegressionBASiCS2017 2017
ImmuneAging2017 2017
Platynereis2017 2017

Pinned Loading

  1. BodenmillerGroup/cytomapper BodenmillerGroup/cytomapper Public

    R package for visualization of highly multiplexed imaging data

    R 32 9

  2. BodenmillerGroup/cytomapper_publication BodenmillerGroup/cytomapper_publication Public

    See static website at https://bodenmillergroup.github.io/cytomapper_publication/

    R 2 2

  3. Thesis Thesis Public

    Latex scripts to compile my PhD thesis

    TeX 7 2

  4. BodenmillerGroup/imcRtools BodenmillerGroup/imcRtools Public

    An R package for handling and analysing imaging mass cytometry data

    R 21 10

  5. BodenmillerGroup/IMCDataAnalysis BodenmillerGroup/IMCDataAnalysis Public

    R based workflow for multiplexed imaging data

    HTML 29 12

  6. BodenmillerGroup/demos BodenmillerGroup/demos Public

    Repository containing demonstrations of lab software

    5 1