My work focuses on single-cell, bioimage and spatial data analysis to understand immune-tumor interactions in various cancer types. I also build R/Bioconductor packages and workflows to standardize bioimage and spatial data analysis.
GitHub statistics
Package maintainer
| Package | Rank | Build |
|---|---|---|
| cytomapper |  |
 |
| imcRtools |  |
 |
Package contributor
| Package | Rank | Build |
|---|---|---|
| BASiCS |  |
 |
| imcdatasets |  |
 |
Workflow maintainer
| Workflow | Build | Website |
|---|---|---|
| IMCWorkflow | https://bodenmillergroup.github.io/IMCWorkflow/ | |
| IMCDataAnalysis |  |
https://github.com/BodenmillerGroup/IMCDataAnalysis |
Analysis repositories
| Repository | Year |
|---|---|
| cytomapper_publication | 2020 |
| GammaDeltaTcells2018 | 2018 |
| Spermatogenesis2018 | 2018 |
| RegressionBASiCS2017 | 2017 |
| ImmuneAging2017 | 2017 |
| Platynereis2017 | 2017 |