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Python package to access a cacophony of neuro-imaging file formats
Python
branch: master

Merge pull request #298 from bcipolli/issue-207

MRG: Add an 'axis' parameter to concat_images, plus two tests

Add ability to concatenate images over given axis, with tests.

Closes #207
latest commit b0a80064c7
@matthew-brett matthew-brett authored
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bin FIX: Remove trace by default
doc DOC: reduce numbers of doc warnings
nibabel-data added ecat test data set with negative values
nibabel RF: try doing image 1 concat stuff outside loop
nisext DOC: correct form of Raises section
tools Merge branch 'doc-pre-release' into main-master
.coveragerc BF: fix broken coverage runs in virtualenv
.gitattributes BF - refactor / bugfix versioning system, add test script
.gitignore MAINT: ignore buildbot patch
.gitmodules added ecat test data set with negative values
.mailmap MAINT: update .mailmap
.travis.yml Merge branch 'doc-pre-release' into main-master
AUTHOR DOC - updating release docs for pending 1.1.0
COPYING DOC: formatting, years in COPYING file
Changelog REL: release 2.0.0
MANIFEST.in BF - add gifti data to manifest, for inclusion in source archive
Makefile RF: use long_description for README.rst
Makefile.win MISC - deleting clib build from windows Makefile
README.rst Merge branch 'doc-pre-release' into main-master
TODO DOC: remove refactoring old ideas, add to TODO
appveyor.yml FIX: Fix badge
setup.py RF: adapt setup.py dependency checks to setuptools.
setup_egg.py RF - add doctest conversion to 2to3
tox.ini NF - tox configuration, with some docs and Makefile targets

README.rst

https://coveralls.io/repos/nipy/nibabel/badge.png?branch=master

NiBabel

Read / write access to some common neuroimaging file formats

This package provides read +/- write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.

Website

Current documentation on nibabel can always be found at the NIPY nibabel website.

Mailing Lists

Please see the nipy devel list. The nipy devel list is fine for user and developer questions about nibabel.

Code

You can find our sources and single-click downloads:

License

Nibabel is licensed under the terms of the MIT license. Some code included with nibabel is licensed under the BSD license. Please see the COPYING file in the nibabel distribution.

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