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Fix an input and corresponding output in FIRST #1124

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Merged
merged 7 commits into from
Jul 13, 2015

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oesteban
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This PR fixes #1123

  • Fix template for input method
  • Fix output

Still necessary to check if output name changes with the input method.

@oesteban
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I've written the theoretical names of outputs, however run_first_all doesn't work with threshold method in my settings, so I can't check it out.

@oesteban oesteban added the bug label Jul 9, 2015
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@satra @chrisfilo , I think this PR is ready to go. Even though I complain about the threshold method in my last update, I think it just doesn't work in the original script shipped with FSL. Documentation of the script doesn't help at all. Additionally, the alternative enum works well. With this PR, at least the interface can be used.

chrisgorgo added a commit that referenced this pull request Jul 13, 2015
Fix an input and corresponding output in FIRST
@chrisgorgo chrisgorgo merged commit af5e6e2 into nipy:master Jul 13, 2015
@oesteban oesteban deleted the bug/fix-1123 branch July 13, 2015 10:18
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FIRST fails generating segmentation_file output path
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