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@effigies effigies commented Mar 3, 2016

Fixes bug introduced in #1161.

Attempting to link to a symlink results in DataSink pushing symlinks to the nipype working directory out onto the filesystem at large. Can reproduce by connecting a Rename node to a DataSink node.

Test verifies the behavior of copying and linking from a symlink, fails prior to fix. Final patch passes optional copyfiles arguments to secondary calls. That seems like the least surprising behavior.

satra added a commit that referenced this pull request Mar 5, 2016
FIX: Use realpath to determine hard link source
@satra satra merged commit d1211be into nipy:master Mar 5, 2016
@effigies effigies deleted the link_chain branch March 6, 2016 02:24
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2 participants