buildtemplateparallel.sh - issue with input files #527
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If I have an array of inputs like: in_files = ['~/data/subject_1/struct.nii','~/data/subject_2/struct.nii','~/data/subject_3/struct.nii'] The current code would turn this into the command: buildtemplateparallel.sh -d 3 -n 1 -g 0.250000 -i 3 -m 30x90x20 -j 4 -o PREFIX -c 2 -r 1 -s PR -t GR struct.nii struct.nii struct.nii Like this, I'm not able to run the buildtemplateparallel interface with Nipype. I think it crashes because it can't find the files. My commit changes the command to the following: buildtemplateparallel.sh -d 3 -n 1 -g 0.250000 -i 3 -m 30x90x20 -j 4 -o PREFIX -c 2 -r 1 -s PR -t GR ~/data/subject_1/struct.nii ~/data/subject_2/struct.nii ~/data/subject_3/struct.nii Like this the full path to structural images is passed to the command and it works.
chrisgorgo
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Mar 8, 2013
buildtemplateparallel.sh - issue with input files
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If I have an array of inputs like:
in_files = ['
/data/subject_1/struct.nii','/data/subject_2/struct.nii','~/data/subject_3/struct.nii']The current code would turn this into the command:
buildtemplateparallel.sh -d 3 -n 1 -g 0.250000 -i 3 -m 30x90x20 -j 4 -o PREFIX -c 2 -r 1 -s PR -t GR struct.nii struct.nii struct.nii
Like this, I'm not able to run the buildtemplateparallel interface. I think it crashes because it can't find the files. My commit changes the command to the following:
buildtemplateparallel.sh -d 3 -n 1 -g 0.250000 -i 3 -m 30x90x20 -j 4 -o PREFIX -c 2 -r 1 -s PR -t GR ~/data/subject_1/struct.nii ~/data/subject_2/struct.nii ~/data/subject_3/struct.nii
Like this the full path to structural images is passed on to the command and the script runs perfectly.