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@satra satra commented Jul 17, 2013

@hjmjohnson: could you take a look to see if this would fail on sge?

i ran into a situation with @poldrack sge cluster on tacc, which inserts a whole lot of custom echos into stdout. this fixes the issue - but i don't know if this heuristic is sufficient.

-----------------------------------------------------------------
-- Welcome to the Lonestar4 Westmere/QDR IB Linux Cluster --
-----------------------------------------------------------------
--> Checking that you specified -V...
--> Checking that you specified a time limit...
--> Checking that you specified a queue...
--> Setting project...
--> Checking that you specified a parallel environment...
--> Checking that you specified a valid parallel environment name...
--> Checking that the number of PEs requested is valid...
--> Ensuring absence of dubious h_vmem,h_data,s_vmem,s_data limits...
--> Requesting valid memory configuration (23.4G)...
--> Verifying HOME file-system availability...
--> Verifying WORK file-system availability...
--> Verifying SCRATCH file-system availability...
--> Checking ssh setup...
--> Checking that you didn't request more cores than the maximum...
--> Checking that you don't already have the maximum number of jobs...
--> Checking that your time limit isn't over the maximum...
--> Checking available allocation...
--> Submitting job...

Your job 1314126 ("initAvg.antsRegistrationTemplateBuilder.satra") has been submitted

satra added a commit that referenced this pull request Jul 20, 2013
fix: check only the last line in the sge qsub stdout
@satra satra merged commit c2ec358 into nipy:master Jul 20, 2013
@satra satra deleted the fix/sge_tacc branch July 20, 2013 01:26
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2 participants