Failed pip install for numpy in python 3.9 on macOS using conda

[djarecka]

Having issue installing numpy with pip in python 3.9.

Reproducing code example:

create -n py39 python=3.9
conda activate py39
pip install numpy

Error message:

Collecting numpy
  Using cached numpy-1.19.2.zip (7.3 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
    Preparing wheel metadata ... done
Building wheels for collected packages: numpy
  Building wheel for numpy (PEP 517) ... error
  ERROR: Command errored out with exit status 1:
   command: /Users/dorota/miniconda3/envs/tmp2_py39/bin/python3.9 /Users/dorota/miniconda3/envs/tmp2_py39/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /var/folders/32/823z586933zbm26chcmcqq1m0000gp/T/tmpzgt575gn
       cwd: /private/var/folders/32/823z586933zbm26chcmcqq1m0000gp/T/pip-install-lelie9ha/numpy
  Complete output (592 lines):
  Running from numpy source directory.
  numpy/random/_bounded_integers.pxd.in has not changed
  numpy/random/_philox.pyx has not changed
  numpy/random/_bounded_integers.pyx.in has not changed
  numpy/random/_sfc64.pyx has not changed
  numpy/random/_mt19937.pyx has not changed
  numpy/random/bit_generator.pyx has not changed
  Processing numpy/random/_bounded_integers.pyx
  numpy/random/mtrand.pyx has not changed
  numpy/random/_generator.pyx has not changed
  numpy/random/_pcg64.pyx has not changed
  numpy/random/_common.pyx has not changed
  Cythonizing sources
  blas_opt_info:
  blas_mkl_info:
  customize UnixCCompiler
    libraries mkl_rt not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  blis_info:
    libraries blis not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  openblas_info:
    libraries openblas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_3_10_blas_threads_info:
  Setting PTATLAS=ATLAS
    libraries tatlas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_3_10_blas_info:
    libraries satlas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_blas_threads_info:
  Setting PTATLAS=ATLAS
    libraries ptf77blas,ptcblas,atlas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_blas_info:
    libraries f77blas,cblas,atlas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  accelerate_info:
    libraries accelerate not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
  Library accelerate was not found. Ignoring
    libraries veclib not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
  Library veclib was not found. Ignoring
    FOUND:
      extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
      extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
      define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
    FOUND:
      extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
      extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
      define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
  svnversion: error: The subversion command line tools are no longer provided by Xcode.
  non-existing path in 'numpy/distutils': 'site.cfg'
  lapack_opt_info:
  lapack_mkl_info:
    libraries mkl_rt not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  openblas_lapack_info:
    libraries openblas not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  openblas_clapack_info:
    libraries openblas,lapack not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  flame_info:
    libraries flame not found in ['/Users/dorota/miniconda3/envs/tmp2_py39/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_3_10_threads_info:
  Setting PTATLAS=ATLAS
    libraries lapack_atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries tatlas,tatlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries tatlas,tatlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/lib
    libraries tatlas,tatlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
    NOT AVAILABLE
  
  atlas_3_10_info:
    libraries lapack_atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries satlas,satlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries satlas,satlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/lib
    libraries satlas,satlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_3_10_info'>
    NOT AVAILABLE
  
  atlas_threads_info:
  Setting PTATLAS=ATLAS
    libraries lapack_atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries ptf77blas,ptcblas,atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/lib
    libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_threads_info'>
    NOT AVAILABLE
  
  atlas_info:
    libraries lapack_atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries f77blas,cblas,atlas not found in /Users/dorota/miniconda3/envs/tmp2_py39/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries f77blas,cblas,atlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/lib
    libraries f77blas,cblas,atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_info'>
    NOT AVAILABLE
  
    FOUND:
      extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
      extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
      define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
  /Users/dorota/miniconda3/envs/tmp2_py39/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
    warnings.warn(msg)
  running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building py_modules sources
  building library "npymath" sources
    adding 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath' to include_dirs.
  None - nothing done with h_files = ['build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/npy_math_internal.h']
  building library "npysort" sources
    adding 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common' to include_dirs.
  None - nothing done with h_files = ['build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common/npy_sort.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common/npy_partition.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common/npy_binsearch.h']
  building library "npyrandom" sources
  building extension "numpy.core._multiarray_tests" sources
  building extension "numpy.core._multiarray_umath" sources
    adding 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath' to include_dirs.
    adding 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath' to include_dirs.
    adding 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common' to include_dirs.
  numpy.core - nothing done with h_files = ['build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath/funcs.inc', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath/simd.inc', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath/loops.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath/matmul.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/umath/clip.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/npy_math_internal.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/src/common/templ_common.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/include/numpy/config.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/include/numpy/_numpyconfig.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-10.9-x86_64-3.9/numpy/core/include/numpy/__ufunc_api.h']
  building extension "numpy.core._umath_tests" sources
  building extension "numpy.core._rational_tests" sources
  building extension "numpy.core._struct_ufunc_tests" sources
  building extension "numpy.core._operand_flag_tests" sources
  building extension "numpy.fft._pocketfft_internal" sources
  building extension "numpy.linalg.lapack_lite" sources
  building extension "numpy.linalg._umath_linalg" sources
  building extension "numpy.random._mt19937" sources
  building extension "numpy.random._philox" sources
  building extension "numpy.random._pcg64" sources
  building extension "numpy.random._sfc64" sources
  building extension "numpy.random._common" sources
  building extension "numpy.random.bit_generator" sources
  building extension "numpy.random._generator" sources
  building extension "numpy.random._bounded_integers" sources
  building extension "numpy.random.mtrand" sources
  building data_files sources
  build_src: building npy-pkg config files
  running build_py
  creating build/lib.macosx-10.9-x86_64-3.9
  creating build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/conftest.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/version.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/_globals.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/dual.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/_distributor_init.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/setup.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/ctypeslib.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/matlib.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying numpy/_pytesttester.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  copying build/src.macosx-10.9-x86_64-3.9/numpy/__config__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/compat
  copying numpy/compat/py3k.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat
  copying numpy/compat/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat
  copying numpy/compat/setup.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat
  copying numpy/compat/_inspect.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/compat/tests
  copying numpy/compat/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat/tests
  copying numpy/compat/tests/test_compat.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/compat/tests
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/umath.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/fromnumeric.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_dtype.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_add_newdocs.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_methods.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_internal.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_string_helpers.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/multiarray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_asarray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/records.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/setup_common.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/memmap.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/overrides.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/getlimits.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_dtype_ctypes.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/defchararray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/shape_base.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/machar.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/setup.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/numeric.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/function_base.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/einsumfunc.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/umath_tests.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_ufunc_config.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_exceptions.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/numerictypes.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/_type_aliases.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/cversions.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/arrayprint.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  copying numpy/core/code_generators/generate_numpy_api.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_numerictypes.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalar_methods.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalarmath.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_item_selection.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_machar.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_arrayprint.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalarbuffer.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_indexerrors.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_print.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_half.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_mem_overlap.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_shape_base.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_deprecations.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_errstate.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_records.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalarinherit.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_indexing.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_umath.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_numeric.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_function_base.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_datetime.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test__exceptions.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_extint128.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_umath_complex.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/_locales.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_defchararray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_conversion_utils.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalarprint.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_abc.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_ufunc.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_dtype.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_umath_accuracy.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_getlimits.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_einsum.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_api.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_longdouble.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_overrides.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_scalar_ctors.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_multiarray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_memmap.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_nditer.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_cpu_features.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_protocols.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  copying numpy/core/tests/test_regression.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/core/tests
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/distutils
  copying numpy/distutils/unixccompiler.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/distutils
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/linalg/tests
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  copying numpy/linalg/tests/test_build.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/linalg/tests
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  copying numpy/ma/extras.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/ma
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  copying numpy/ma/timer_comparison.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/ma
  copying numpy/ma/mrecords.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/ma
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/ma/tests
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib
  copying numpy/matrixlib/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib
  copying numpy/matrixlib/setup.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib
  copying numpy/matrixlib/defmatrix.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_matrix_linalg.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_defmatrix.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_interaction.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_numeric.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_masked_matrix.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_multiarray.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  copying numpy/matrixlib/tests/test_regression.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/matrixlib/tests
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/laguerre.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/_polybase.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/polyutils.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/setup.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/hermite_e.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/chebyshev.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/polynomial.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
  copying numpy/polynomial/legendre.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
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  copying numpy/polynomial/tests/test_polynomial.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_laguerre.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_legendre.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_printing.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_hermite.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_classes.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  copying numpy/polynomial/tests/test_polyutils.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/polynomial/tests
  creating build/lib.macosx-10.9-x86_64-3.9/numpy/random
  copying numpy/random/_pickle.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_generator_mt19937.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_randomstate.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
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  copying numpy/random/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_smoke.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_randomstate_regression.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_seed_sequence.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
  copying numpy/random/tests/test_generator_mt19937_regressions.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/random/tests
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/testing
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/testing/_private
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/testing/tests
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  creating build/lib.macosx-10.9-x86_64-3.9/numpy/tests
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  copying numpy/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/tests
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  copying numpy/tests/test_scripts.py -> build/lib.macosx-10.9-x86_64-3.9/numpy/tests
  running build_clib
  customize UnixCCompiler
  customize UnixCCompiler using new_build_clib
  building 'npymath' library
  compiling C sources
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/dorota/miniconda3/envs/tmp2_py39/include -fPIC -O2 -isystem /Users/dorota/miniconda3/envs/tmp2_py39/include
  
  creating build/temp.macosx-10.9-x86_64-3.9
  creating build/temp.macosx-10.9-x86_64-3.9/numpy
  creating build/temp.macosx-10.9-x86_64-3.9/numpy/core
  creating build/temp.macosx-10.9-x86_64-3.9/numpy/core/src
  creating build/temp.macosx-10.9-x86_64-3.9/numpy/core/src/npymath
  creating build/temp.macosx-10.9-x86_64-3.9/build
  creating build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9
  creating build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy
  creating build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy/core
  creating build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy/core/src
  creating build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath
  compile options: '-Ibuild/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.macosx-10.9-x86_64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/Users/dorota/miniconda3/envs/tmp2_py39/include/python3.9 -Ibuild/src.macosx-10.9-x86_64-3.9/numpy/core/src/common -Ibuild/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath -c'
  clang: numpy/core/src/npymath/npy_math.c
  clang: build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/npy_math_complex.c
  clang: build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/ieee754.c
  clang: numpy/core/src/npymath/halffloat.c
  llvm-ar: adding 4 object files to build/temp.macosx-10.9-x86_64-3.9/libnpymath.a
  error: Command "/Users/runner/miniforge3/conda-bld/python-split_1602715575872/_build_env/bin/llvm-ar rcs build/temp.macosx-10.9-x86_64-3.9/libnpymath.a build/temp.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/npy_math.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/ieee754.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/npy_math_complex.o build/temp.macosx-10.9-x86_64-3.9/numpy/core/src/npymath/halffloat.o" failed with exit status 127
  ----------------------------------------
  ERROR: Failed building wheel for numpy
Failed to build numpy
ERROR: Could not build wheels for numpy which use PEP 517 and cannot be installed directly

NumPy/Python version information:

OSX 10.15.6
conda 4.8.5
pip 20.2.3

[IchiruTake]

I think numpy is not yet being prepared for Python 3.9 since they need to check a lot of times. You should try Python 3.7 or 3.8 is better

[MarkWieczorek]

I am having the same problem, but when trying to install my own python project that compiles some fortran source files. It looks like the program llvm-ar is not installed on macOS. If you look at the output when you install this with python 3.8, you will see that it uses ar instead (which is installed). I have no idea why they changed the default from ar to llvm-ar.

[Talador12]

#17777 is related. I am considering going back to python 3.8 as well.

[Talador12]

Well - fixed the issue but it required a change in python environment.

The above pip install was actually using conda, and the cross between them broke the install.

The particular config option set was conda config --set pip_interop_enabled True

Looks like the culprit might be numpy installed by conda using the pip interop option. In hindsight, pip and conda don't always mix well.

[dmtrinh]

Same issue on Windows 10 Version 20H2 (OS Build 19042.746) with Python 3.9.1

[louis030195]

Same

OSX 11.6
pip 21.2.4
python 3.9.6

[matfij]

Same error on Win10, with python 3.9.0 but it work on a Docker container based on python:3.9-slim image.

[ColinG2]

I'm having the exact same issue on Win10, with python 3.10

[rahuljosephfernandez]

I have the same issue on Mac 10.14, with python 3.10 as well as python 3.8.7