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SNPlytics 1.0.0

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@oktarguloglu oktarguloglu released this 19 Aug 14:46
v1.0.0
ef57d84

First public release of SNPlytics — free macOS app for TaqMan endpoint SNP genotyping.

Download: SNPlytics-1.0.0.dmg (universal, Apple Silicon + Intel, macOS 14 or later). Signed and notarized — opens with a double-click. SNPlytics-1.0.0-universal.zip carries the same app for anyone who prefers a zip. Verify with SHA256SUMS.txt.

Highlights

  • Five independent genotype callers (ALCHEMY, BCGA, fitPoly, Polar, Robust‑t) with a consensus you configure per project — tick who votes; unanimous calls pass, majority calls are flagged, splits are held for review.
  • Manual curation that survives re-runs, caller toggles and compensation changes, saved in .snplytics projects (Finder double-click, drag onto the window or Dock icon).
  • Statistics with provenance: QC (call rate, NTC checks, cluster separation), Hardy–Weinberg (χ² + exact), allelic/genotypic association, odds ratios with Woolf intervals, Bonferroni and Benjamini–Hochberg.
  • Exports: genotype tables, figures (PNG/PDF), statistics report, cited methods paragraph for exactly the callers you ran, reproducibility bundle with R and Python scripts.
  • Importers: Roche LightCycler (.txt/.ixo/.rdml), Bio-Rad CFX (.rdml), Thermo/ABI EDS; 96/384/1536-well layouts; sample-sheet CSV import; multi-plate studies.
  • Built-in sample plate (File ▸ Open Sample Plate) to try everything without your own file.

Research use only — not a medical device. Freeware under the included EULA; fully offline, no telemetry.

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