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update scprint #70

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Merged
merged 1 commit into from
Aug 9, 2025
Merged

update scprint #70

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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,10 @@
* Un-pin the scPRINT version and update parameters (PR #51)
* Update scPRINT to better handle large datasets, including a new default model (PR #54)

## Bug fixes

* Update scPRINT to use latest stable version (PR #xx)

# task_batch_integration 2.0.0

A major update to the OpenProblems framework, switching from a Python-based framework to a Viash + Nextflow-based framework. This update features the same concepts as the previous version, but with a new implementation that is more flexible, scalable, and maintainable.
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11 changes: 5 additions & 6 deletions src/methods/scprint/config.vsh.yaml
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Expand Up @@ -75,13 +75,12 @@ engines:
setup:
- type: python
pip:
- git+https://github.com/cantinilab/scPRINT.git@d8cc270b099c8d5dacf6913acc26f2b696685b2b
- gseapy==1.1.2
- git+https://github.com/jkobject/scDataLoader.git@c67c24a2e5c62399912be39169aae76e29e108aa
- scprint>=2.3.0
- gseapy>=1.1.8
- type: docker
run: lamin init --storage ./main --name main --schema bionty
- type: docker
run: lamin load anonymous/main
run: |
lamin init --storage ./main --name main --schema bionty && \
lamin load anonymous/main
- type: python
script: import bionty as bt; bt.core.sync_all_sources_to_latest()
- type: python
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